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Protein
Homologs
Fitness for 5 genes in
Rahnella sp. WP5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX31_RS07825 and EX31_RS07830 are separated by 51 nucleotides
EX31_RS07830 and EX31_RS07835 are separated by 260 nucleotides
EX31_RS07835 and EX31_RS07840 overlap by 11 nucleotides
EX31_RS07840 and EX31_RS07845 overlap by 23 nucleotides
EX31_RS07825: EX31_RS07825 - RNA polymerase sigma factor RpoS, at 48,543 to 49,529
_RS07825
EX31_RS07830: EX31_RS07830 - murein hydrolase activator NlpD, at 49,581 to 50,585
_RS07830
EX31_RS07835: EX31_RS07835 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 50,846 to 51,472
_RS07835
EX31_RS07840: EX31_RS07840 - 5'/3'-nucleotidase SurE, at 51,462 to 52,229
_RS07840
EX31_RS07845: EX31_RS07845 - tRNA pseudouridine(13) synthase TruD, at 52,207 to 53,256
_RS07845
Group
Condition
EX31
_RS07825
EX31
_RS07830
EX31
_RS07835
EX31
_RS07840
EX31
_RS07845
nf_with_fulln
NF_with_fullN
-0.7
-4.5
-0.5
-0.1
-0.2
nf_with_fulln
NF_with_fullN
-0.6
-4.1
-0.5
-0.2
-0.2
nf_with_fulln
NF_with_fullN
-0.5
-4.2
-0.4
-0.2
-0.1
nf_with_fulln
NF_with_fullN
-0.6
-3.9
-0.3
-0.2
-0.1
nf_with_fulln
NF_with_fullN
-0.6
-3.8
-0.3
-0.2
-0.2
nf_with_fulln
NF_with_fullN
-0.6
-3.8
-0.5
-0.1
-0.0
nf_with10percent_fulln
NF_with10percent_fullN
-0.0
-2.7
-0.2
-0.0
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.2
-2.5
-0.3
-0.1
+0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-2.2
-0.3
-0.0
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-2.1
-0.2
-0.1
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-1.9
-0.4
+0.1
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
-0.1
-1.9
-0.1
-0.1
-0.1
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
+0.4
-2.6
-0.2
-0.1
+0.2
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.3
-1.9
-0.1
+0.0
-0.1
nln
NLN
-0.2
-1.5
-0.3
-0.1
-0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
-0.5
-1.3
-0.2
+0.1
-0.1
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.2
-1.9
+0.0
+0.0
-0.0
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
+0.5
-2.3
-0.0
-0.0
-0.0
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
+0.5
-1.8
-0.0
+0.1
+0.0
mixed community
NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum
+0.9
-1.3
-0.3
-0.1
-0.0
mgl
MGL
+1.3
+0.4
-0.4
-0.1
-0.1
carbon source
D-Glucose (C)
+0.6
+1.7
-0.1
-0.1
+0.1
mgl
MGL
+1.7
+0.9
-0.1
-0.1
-0.2
carbon source
D,L-Lactate (C)
+1.3
+1.7
-0.7
-0.0
+0.0
carbon source
D,L-Lactate (C)
+1.1
+1.6
-0.4
+0.0
+0.2
mgl
MGL
+1.7
+1.0
+0.0
-0.1
+0.2
mgl
MGL
+1.7
+1.4
-0.2
+0.0
-0.0
mgl
MGL
+2.0
+1.2
-0.0
-0.1
-0.1
mgl
MGL
+1.7
+2.0
-0.2
+0.0
-0.0
carbon source
NLDM_metabolites (C)
+2.3
+1.8
-0.1
+0.2
+0.0
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