Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07825 and EX31_RS07830 are separated by 51 nucleotidesEX31_RS07830 and EX31_RS07835 are separated by 260 nucleotidesEX31_RS07835 and EX31_RS07840 overlap by 11 nucleotidesEX31_RS07840 and EX31_RS07845 overlap by 23 nucleotides EX31_RS07825: EX31_RS07825 - RNA polymerase sigma factor RpoS, at 48,543 to 49,529 _RS07825 EX31_RS07830: EX31_RS07830 - murein hydrolase activator NlpD, at 49,581 to 50,585 _RS07830 EX31_RS07835: EX31_RS07835 - protein-L-isoaspartate(D-aspartate) O-methyltransferase, at 50,846 to 51,472 _RS07835 EX31_RS07840: EX31_RS07840 - 5'/3'-nucleotidase SurE, at 51,462 to 52,229 _RS07840 EX31_RS07845: EX31_RS07845 - tRNA pseudouridine(13) synthase TruD, at 52,207 to 53,256 _RS07845
Group Condition EX31_RS07825 EX31_RS07830 EX31_RS07835 EX31_RS07840 EX31_RS07845
nf_with_fulln NF_with_fullN -0.7 -4.5 -0.5 -0.1 -0.2
nf_with_fulln NF_with_fullN -0.6 -4.1 -0.5 -0.2 -0.2
nf_with_fulln NF_with_fullN -0.5 -4.2 -0.4 -0.2 -0.1
nf_with_fulln NF_with_fullN -0.6 -3.9 -0.3 -0.2 -0.1
nf_with_fulln NF_with_fullN -0.6 -3.8 -0.3 -0.2 -0.2
nf_with_fulln NF_with_fullN -0.6 -3.8 -0.5 -0.1 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.0 -2.7 -0.2 -0.0 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.2 -2.5 -0.3 -0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 -2.2 -0.3 -0.0 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 -2.1 -0.2 -0.1 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 -1.9 -0.4 +0.1 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 -1.9 -0.1 -0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 -2.6 -0.2 -0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -1.9 -0.1 +0.0 -0.1
nln NLN -0.2 -1.5 -0.3 -0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.5 -1.3 -0.2 +0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -1.9 +0.0 +0.0 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.5 -2.3 -0.0 -0.0 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.5 -1.8 -0.0 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.9 -1.3 -0.3 -0.1 -0.0
mgl MGL +1.3 +0.4 -0.4 -0.1 -0.1
carbon source D-Glucose (C) +0.6 +1.7 -0.1 -0.1 +0.1
mgl MGL +1.7 +0.9 -0.1 -0.1 -0.2
carbon source D,L-Lactate (C) +1.3 +1.7 -0.7 -0.0 +0.0
carbon source D,L-Lactate (C) +1.1 +1.6 -0.4 +0.0 +0.2
mgl MGL +1.7 +1.0 +0.0 -0.1 +0.2
mgl MGL +1.7 +1.4 -0.2 +0.0 -0.0
mgl MGL +2.0 +1.2 -0.0 -0.1 -0.1
mgl MGL +1.7 +2.0 -0.2 +0.0 -0.0
carbon source NLDM_metabolites (C) +2.3 +1.8 -0.1 +0.2 +0.0
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