Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07685 and EX31_RS07690 are separated by 20 nucleotidesEX31_RS07690 and EX31_RS07695 overlap by 8 nucleotidesEX31_RS07695 and EX31_RS07700 overlap by 4 nucleotidesEX31_RS07700 and EX31_RS07705 are separated by 2 nucleotides EX31_RS07685: EX31_RS07685 - phage tail assembly protein, at 21,319 to 21,606 _RS07685 EX31_RS07690: EX31_RS07690 - GpE family phage tail protein, at 21,627 to 21,761 _RS07690 EX31_RS07695: EX31_RS07695 - phage tail tape measure protein, at 21,754 to 23,385 _RS07695 EX31_RS07700: EX31_RS07700 - phage tail protein, at 23,382 to 23,852 _RS07700 EX31_RS07705: EX31_RS07705 - tail protein, at 23,855 to 24,955 _RS07705
Group Condition EX31_RS07685 EX31_RS07690 EX31_RS07695 EX31_RS07700 EX31_RS07705
nitrogen source L-Serine (N); RCH2 media; no shaking -1.2 +0.1 +0.2 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.1 +0.2 +0.2 +0.1 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.7 -0.3 -0.0 +0.1 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.6 -0.2 +0.1 -0.1 +0.1
carbon source Sucrose (C) -1.0 +0.3 +0.1 +0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.6 +0.2 +0.1 +0.0 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -1.0 +0.6 +0.1 +0.1 -0.1
carbon source D,L-Lactate (C) -0.4 -0.2 +0.1 +0.3 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.6 +0.2 +0.0 +0.0 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 +0.2 +0.2 +0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 -0.3 -0.1 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 +0.3 +0.1 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 -0.2 -0.2 -0.1 +0.2
carbon source D,L-Lactate (C) +0.6 +0.0 -0.0 -0.2 +0.2
carbon source D-Mannitol (C) +0.6 -0.1 +0.1 +0.2 -0.1
carbon source NLDM_metabolites (C) -0.3 +0.4 +0.5 +0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 +0.4 +0.3 +0.2 +0.1
carbon source D-Mannitol (C) +0.6 -0.0 +0.1 +0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.5 +0.2 +0.2 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.5 -0.0 +0.1 +0.2 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.4 +0.3 +0.2 +0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.4 +0.3 -0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.6 +0.3 +0.1 -0.0 +0.0
carbon source casaminos (C) +0.4 +0.2 +0.4 +0.0 +0.0
carbon source Sucrose (C) +0.8 -0.1 +0.1 +0.2 +0.1
carbon source D-Xylose (C) +0.6 -0.1 +0.4 +0.2 +0.1
carbon source D-Glucose (C) +0.4 +0.1 +0.3 +0.1 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.7 +0.4 +0.2 -0.0 +0.1
carbon source D-Xylose (C) +0.6 +0.2 +0.3 +0.2 +0.2
carbon source casaminos (C) +0.7 -0.1 +0.3 +0.2 +0.6
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EX31_RS07685
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EX31_RS07690
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EX31_RS07705
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