Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07415 and EX31_RS07420 overlap by 55 nucleotidesEX31_RS07420 and EX31_RS07425 are separated by 139 nucleotidesEX31_RS07425 and EX31_RS07430 are separated by 250 nucleotidesEX31_RS07430 and EX31_RS07435 are separated by 3 nucleotides EX31_RS07415: EX31_RS07415 - bifunctional diguanylate cyclase/phosphodiesterase, at 296,176 to 297,726 _RS07415 EX31_RS07420: EX31_RS07420 - bifunctional helix-turn-helix transcriptional regulator/GNAT family N-acetyltransferase, at 297,672 to 298,673 _RS07420 EX31_RS07425: EX31_RS07425 - MurR/RpiR family transcriptional regulator, at 298,813 to 299,664 _RS07425 EX31_RS07430: EX31_RS07430 - transporter substrate-binding domain-containing protein, at 299,915 to 300,751 _RS07430 EX31_RS07435: EX31_RS07435 - urea carboxylase-associated family protein, at 300,755 to 301,384 _RS07435
Group Condition EX31_RS07415 EX31_RS07420 EX31_RS07425 EX31_RS07430 EX31_RS07435
carbon source NLDM_metabolites (C) -3.7 +0.4 -0.8 +0.7 -0.3
mgl MGL -3.6 -0.0 +0.2 -0.4 +0.2
nl-ccm; vial NL-CCM; vial -1.5 -0.1 +0.5 -0.9 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -2.1 -0.4 +0.0 +0.2 +0.1
nln NLN -2.0 +0.1 +0.3 -0.6 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.6 -0.0 +0.4 -1.5 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -1.1 -0.2 +0.5 -0.1 -0.4
nitrogen source L-Serine (N); ShewMM media; shaking -1.8 -0.2 -0.0 +0.6 +0.3
nitrogen source L-Serine (N); ShewMM media; shaking -2.2 +0.1 +0.3 +0.4 +0.5
carbon source D,L-Lactate (C) -2.1 +0.3 -0.3 +0.5 +0.8
carbon source D-Mannitol (C) -1.4 -0.1 +0.1 +0.2 +0.4
carbon source D-Xylose (C) -1.2 -0.5 +0.1 +0.2 +0.7
nitrogen source L-Glutamine (N); RCH2 media; shaking -1.5 +0.2 -0.2 +1.0 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -1.1 +0.1 +0.5 +0.3 -0.3
carbon source D-Mannitol (C) -1.4 -0.2 +0.0 +0.6 +0.3
nln NLN -1.0 +0.1 +0.4 -0.3 +0.3
nf_with10percent_fulln NF_with10percent_fullN -0.9 +0.3 +0.2 -0.4 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.7 -0.3 +0.5 +1.2 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 -0.0 +0.5 +0.8 -0.6
carbon source casaminos (C) -0.7 +0.2 -0.3 +0.4 +0.9
carbon source Sucrose (C) -1.1 +0.1 +0.5 +0.8 +0.3
carbon source Sucrose (C) -0.5 -0.3 +0.3 +0.7 +0.6
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +1.1 -0.0 +0.6 -0.6 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 +0.3 -0.6 +1.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.7 +0.3 -0.1 +0.9 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +1.1 -0.2 +0.7 +0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.3 +0.1 +0.9 +0.8
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.3 +0.8 +1.0 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.9 -0.2 +0.2 +1.1 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +1.4 -0.1 -0.1 +1.3 +0.6
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EX31_RS07415
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EX31_RS07420
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EX31_RS07435
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