Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07240 and EX31_RS07245 overlap by 1 nucleotidesEX31_RS07245 and EX31_RS07250 overlap by 4 nucleotidesEX31_RS07250 and EX31_RS07255 are separated by 83 nucleotidesEX31_RS07255 and EX31_RS07260 are separated by 209 nucleotides EX31_RS07240: EX31_RS07240 - ABC transporter permease, at 248,159 to 249,085 _RS07240 EX31_RS07245: EX31_RS07245 - ABC transporter ATP-binding protein, at 249,085 to 249,915 _RS07245 EX31_RS07250: EX31_RS07250 - ABC transporter ATP-binding protein, at 249,912 to 250,685 _RS07250 EX31_RS07255: EX31_RS07255 - serine hydrolase, at 250,769 to 252,322 _RS07255 EX31_RS07260: EX31_RS07260 - formate-dependent uric acid utilization protein AegA, at 252,532 to 254,511 _RS07260
Group Condition EX31_RS07240 EX31_RS07245 EX31_RS07250 EX31_RS07255 EX31_RS07260
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 -0.5 -1.1 -1.2 +0.2
carbon source casaminos (C) -0.1 -0.6 +0.3 -0.9 -0.3
carbon source NLDM_metabolites (C) -0.0 +0.1 +0.3 -1.7 -0.2
carbon source D-Glucose (C) -0.2 -0.6 -0.0 -0.5 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.3 -0.3 -0.5 -0.4 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.6 -0.9 +0.1 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.7 -0.3 -0.2 -0.2 +0.2
carbon source NLDM_metabolites (C) +0.4 -1.6 -0.2 +0.0 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.4 -0.8 -0.0 +0.1 +0.1
carbon source D,L-Lactate (C) -0.9 +0.0 +0.6 -0.5 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 -0.6 +0.2 -0.4 -0.3
mgl MGL +0.1 -0.5 +0.2 -0.5 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.6 +0.4 -0.0 -0.7 +0.2
carbon source Sucrose (C) -0.1 -0.0 +0.5 -0.6 -0.2
carbon source D-Xylose (C) -0.1 -0.3 +0.4 -0.4 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.4 -0.4 +0.1 -0.4 -0.1
carbon source D-Mannitol (C) +0.3 -0.4 +0.1 -0.3 +0.1
carbon source D-Mannitol (C) -0.6 +0.1 +0.4 -0.2 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.6 +0.4 +0.2 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 +0.4 -0.1 -0.6 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 +0.6 +0.2 -0.4 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 -0.6 +0.1 +0.1 +0.2
carbon source casaminos (C) +0.0 -0.5 +0.7 +0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.4 -0.7 +0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 -0.5 -0.0 +0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.6 +0.1 -0.5 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.4 +0.4 +0.4 +0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.4 -0.1 +0.3 -0.4 +0.2
mgl MGL +0.4 +0.2 -0.3 +0.3 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 +0.4 +0.2 +0.7 +0.0
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