Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07100 and EX31_RS07105 are separated by 318 nucleotidesEX31_RS07105 and EX31_RS07110 are separated by 44 nucleotidesEX31_RS07110 and EX31_RS07115 overlap by 8 nucleotidesEX31_RS07115 and EX31_RS07120 are separated by 187 nucleotides EX31_RS07100: EX31_RS07100 - DUF1161 domain-containing protein, at 212,688 to 212,981 _RS07100 EX31_RS07105: EX31_RS07105 - DUF3811 domain-containing protein, at 213,300 to 213,566 _RS07105 EX31_RS07110: EX31_RS07110 - sulfurtransferase, at 213,611 to 215,230 _RS07110 EX31_RS07115: EX31_RS07115 - cysteine dioxygenase, at 215,223 to 215,828 _RS07115 EX31_RS07120: EX31_RS07120 - LysR family transcriptional regulator, at 216,016 to 216,909 _RS07120
Group Condition EX31_RS07100 EX31_RS07105 EX31_RS07110 EX31_RS07115 EX31_RS07120
nf_with_fulln NF_with_fullN +0.0 -0.3 -0.2 -1.8 -0.3
carbon source D,L-Lactate (C) -0.0 -0.3 +0.0 -1.2 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 -0.5 +0.3 -0.1 -1.2
mgl MGL -0.2 -0.2 -0.2 -0.9 -0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.6 +0.0 -1.2 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.9 -0.2 -0.3 -0.1
nf_with_fulln NF_with_fullN +0.1 -0.1 -0.2 -1.2 -0.3
carbon source D-Xylose (C) +0.3 -0.9 -0.1 -0.5 -0.1
carbon source D-Mannitol (C) -0.0 +0.5 +0.0 -1.5 -0.2
nf_with_fulln NF_with_fullN +0.3 -0.4 +0.0 -0.8 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 -0.3 +0.3 -1.0 -0.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.3 +0.2 -1.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 -0.9 -0.1 -0.4 +0.5
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 +0.1 -0.1 -1.2 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen +0.4 -0.4 -0.1 -0.6 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.5 -0.3 +0.1 -0.3 -0.7
carbon source casaminos (C) +0.4 +0.2 +0.1 -0.6 -0.7
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 +0.1 -0.2 -0.5 -0.4
carbon source NLDM_metabolites (C) +0.6 -1.3 -0.1 +0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -0.7 +0.2 -0.2 +0.4
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 +0.1 +0.2 -0.8 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 -0.9 +0.2 +0.6 +0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.6 +0.2 +0.2 +0.7
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 +0.5 -0.1 -0.2 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 +0.7 +0.2 +0.4 -0.7
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 +0.5 +0.2 -0.7 +0.5
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.5 +0.5 +0.4 +0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 -0.3 +0.0 +0.8 +0.5
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.3 +0.3 +0.9 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.7 +0.5 +0.2 +0.3 +0.4
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