Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS07020 and EX31_RS07025 overlap by 8 nucleotidesEX31_RS07025 and EX31_RS07030 are separated by 115 nucleotidesEX31_RS07030 and EX31_RS07035 overlap by 4 nucleotidesEX31_RS07035 and EX31_RS25225 are separated by 224 nucleotides EX31_RS07020: EX31_RS07020 - xanthine dehydrogenase molybdopterin binding subunit, at 193,697 to 196,096 _RS07020 EX31_RS07025: EX31_RS07025 - xanthine dehydrogenase small subunit, at 196,089 to 197,492 _RS07025 EX31_RS07030: EX31_RS07030 - TetR family transcriptional regulator, at 197,608 to 198,276 _RS07030 EX31_RS07035: EX31_RS07035 - guanine deaminase, at 198,273 to 199,625 _RS07035 EX31_RS25225: EX31_RS25225 - hypothetical protein, at 199,850 to 200,440 _RS25225
Group Condition EX31_RS07020 EX31_RS07025 EX31_RS07030 EX31_RS07035 EX31_RS25225
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.6 -0.1 -0.2 -0.9
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.1 -0.1 -0.6 -0.9
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 -0.7 -0.1 +0.1 -0.3
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.2 -0.2 -0.4 -0.6
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.2 -0.4 -0.4 -0.2
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.1 +0.3 -0.6 -0.4
nf_with_fulln NF_with_fullN -0.1 +0.4 +0.2 -0.3 -0.9
nf_with10percent_fulln NF_with10percent_fullN -0.4 +0.3 +0.4 -0.9 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -1.0 +0.0 +0.1 +0.3
nf_with_fulln NF_with_fullN -0.0 +0.4 +0.2 -0.6 -0.2
carbon source NLDM_metabolites (C) +0.0 +0.2 +0.4 -0.7 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.6 +0.2 -0.0 -0.2 +0.5
nf_with_fulln NF_with_fullN -0.4 +0.4 +0.3 -0.3 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.3 -0.2 -0.5 +0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.5 +0.1 -0.2 +0.1 +0.6
carbon source D-Xylose (C) -0.4 +0.0 +0.4 -0.1 +0.7
nf_with_fulln NF_with_fullN -0.0 +0.6 +0.2 -0.6 +0.6
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.4 -0.1 -0.2 +0.6
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 +0.4 -0.3 +0.2 +0.5
carbon source casaminos (C) -0.2 +0.1 +0.4 +0.2 +0.4
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 +0.2 -0.2 -0.3 +0.9
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 +0.5 +0.2 -0.3 +0.4
carbon source D,L-Lactate (C) -0.4 +0.3 +0.4 +0.3 +0.4
carbon source NLDM_metabolites (C) +0.2 -0.1 -0.2 +0.0 +1.2
nln NLN -0.1 +0.7 +0.2 -0.1 +0.5
carbon source casaminos (C) +0.2 +0.2 +0.2 -0.1 +0.6
carbon source Sucrose (C) -0.2 +0.4 +0.3 -0.0 +0.8
carbon source D-Mannitol (C) -0.1 -0.0 +0.3 +0.1 +1.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 +0.5 +0.1 +0.2 +0.5
carbon source Sucrose (C) -0.0 +0.4 +0.1 +0.2 +1.1
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EX31_RS07020
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EX31_RS07025
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EX31_RS07035
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EX31_RS25225
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