Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS06730 and EX31_RS06735 overlap by 4 nucleotidesEX31_RS06735 and EX31_RS06740 are separated by 247 nucleotidesEX31_RS06740 and EX31_RS06745 are separated by 17 nucleotidesEX31_RS06745 and EX31_RS06750 overlap by 1 nucleotides EX31_RS06730: EX31_RS06730 - formimidoylglutamate deiminase, at 130,959 to 132,332 _RS06730 EX31_RS06735: EX31_RS06735 - HutD family protein, at 132,329 to 132,910 _RS06735 EX31_RS06740: EX31_RS06740 - ABC transporter substrate-binding protein, at 133,158 to 134,138 _RS06740 EX31_RS06745: EX31_RS06745 - ABC transporter permease, at 134,156 to 135,037 _RS06745 EX31_RS06750: EX31_RS06750 - ABC transporter ATP-binding protein, at 135,037 to 135,822 _RS06750
Group Condition EX31_RS06730 EX31_RS06735 EX31_RS06740 EX31_RS06745 EX31_RS06750
carbon source NLDM_metabolites (C) +0.0 -1.3 +0.2 -0.1 -0.3
carbon source D-Mannitol (C) -0.1 -0.3 -0.2 -0.0 -0.7
carbon source D-Glucose (C) -0.3 -0.5 +0.1 +0.1 -0.3
carbon source D-Xylose (C) -0.1 -1.2 +0.3 +0.0 +0.2
carbon source Sucrose (C) +0.1 -0.9 -0.1 +0.1 +0.1
carbon source D,L-Lactate (C) -0.3 -0.7 +0.1 -0.0 +0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 +0.1 -0.4 -0.4 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.3 -0.4 +0.1 -0.4
nf_with_fulln NF_with_fullN -0.0 +0.4 -0.2 +0.1 -0.5
nitrogen source L-Serine (N); ShewMM media; no shaking -0.2 +0.3 -0.4 -0.1 +0.2
nf_with_fulln NF_with_fullN +0.1 +0.6 -0.2 -0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.5 +0.0 -0.0 +0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.3 -0.0 +0.2 -0.2 +0.4
carbon source D-Mannitol (C) -0.1 -0.6 +0.3 +0.3 +0.3
mgl MGL -0.5 +0.8 +0.2 +0.0 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.4 +0.2 -0.1 +0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.8 -0.2 -0.3 +0.1
carbon source Sucrose (C) +0.3 -0.2 +0.6 +0.2 -0.4
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 +0.4 -0.3 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 +0.6 +0.3 -0.1 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.5 -0.1 -0.2 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.7 -0.1 -0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.7 -0.2 +0.1 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 +0.4 +0.4 -0.1 -0.1
nf_with_fulln NF_with_fullN +0.0 +0.9 -0.1 +0.2 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.7 +0.3 -0.0 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.9 +0.1 -0.2 +0.5
nf_with10percent_fulln NF_with10percent_fullN -0.0 +0.6 +0.3 +0.2 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.7 +0.1 +0.3 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 +1.1 +0.2 -0.2 +0.4
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EX31_RS06750
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