Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS06525 and EX31_RS06530 are separated by 66 nucleotidesEX31_RS06530 and EX31_RS06535 overlap by 4 nucleotidesEX31_RS06535 and EX31_RS06540 are separated by 15 nucleotidesEX31_RS06540 and EX31_RS06545 are separated by 347 nucleotides EX31_RS06525: EX31_RS06525 - hypothetical protein, at 78,945 to 79,364 _RS06525 EX31_RS06530: EX31_RS06530 - cytochrome c, at 79,431 to 80,666 _RS06530 EX31_RS06535: EX31_RS06535 - GMC family oxidoreductase, at 80,663 to 82,426 _RS06535 EX31_RS06540: EX31_RS06540 - gluconate 2-dehydrogenase subunit 3 family protein, at 82,442 to 83,191 _RS06540 EX31_RS06545: EX31_RS06545 - YchO/YchP family invasin, at 83,539 to 85,047 _RS06545
Group Condition EX31_RS06525 EX31_RS06530 EX31_RS06535 EX31_RS06540 EX31_RS06545
carbon source NLDM_metabolites (C) +0.0 -1.2 -0.7 +0.0 -0.3
carbon source NLDM_metabolites (C) -0.3 -0.1 +0.0 +0.2 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.0 +0.2 -0.4 -0.5 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.2 -0.3 -0.3 -0.6
carbon source casaminos (C) -0.2 -0.5 -0.7 +0.3 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.2 -0.2 -0.2 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 -0.2 -0.2 -0.2 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.2 +0.1 -0.3 -0.3
mgl MGL +0.3 -0.3 +0.0 -0.3 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.4 -0.3 -0.1 -0.2 +0.0
carbon source Sucrose (C) +0.2 -0.4 -0.1 +0.3 -0.1
carbon source D-Mannitol (C) +0.5 -0.3 -0.0 -0.1 -0.1
carbon source D-Mannitol (C) +0.4 -0.3 +0.0 +0.3 -0.4
nitrogen source L-Serine (N); RCH2 media; shaking +0.4 +0.2 -0.0 -0.2 -0.2
nln NLN +0.5 -0.2 +0.1 +0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 -0.3 +0.2 -0.1 +0.1
nln NLN +0.6 -0.2 -0.0 +0.1 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.3 +0.4 -0.1 +0.2 -0.1
nf_with10percent_fulln NF_with10percent_fullN +0.7 +0.0 +0.0 -0.1 +0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.0 -0.2 +0.0 +0.2 -0.1
carbon source D-Xylose (C) +0.9 +0.0 +0.0 +0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.7 +0.2 +0.0 +0.1 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.6 -0.0 +0.3 +0.0 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.0 -0.1 -0.1 +0.2 +0.0
carbon source D-Xylose (C) +1.1 -0.1 -0.1 +0.2 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.0 +0.0 -0.0 +0.0 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.1 +0.0 -0.1 +0.0 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.1 -0.0 +0.1 +0.0 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.8 +0.0 +0.1 +0.0 +0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.3 -0.1 +0.1 +0.2 -0.1
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