Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS06350 and EX31_RS06355 are separated by 64 nucleotidesEX31_RS06355 and EX31_RS06360 are separated by 113 nucleotidesEX31_RS06360 and EX31_RS06365 are separated by 79 nucleotidesEX31_RS06365 and EX31_RS06370 are separated by 283 nucleotides EX31_RS06350: EX31_RS06350 - peptide ABC transporter substrate-binding protein, at 32,790 to 34,424 _RS06350 EX31_RS06355: EX31_RS06355 - MFS transporter, at 34,489 to 35,691 _RS06355 EX31_RS06360: EX31_RS06360 - LysR family transcriptional regulator, at 35,805 to 36,740 _RS06360 EX31_RS06365: EX31_RS06365 - zinc transporter ZntB, at 36,820 to 37,803 _RS06365 EX31_RS06370: EX31_RS06370 - hypothetical protein, at 38,087 to 38,764 _RS06370
Group Condition EX31_RS06350 EX31_RS06355 EX31_RS06360 EX31_RS06365 EX31_RS06370
carbon source NLDM_metabolites (C) -0.2 +0.7 -0.8 -0.1 -1.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.0 -0.3 -0.3 -0.5
carbon source casaminos (C) +0.2 -0.2 -0.5 +0.0 -0.3
mgl MGL -0.0 +0.2 +0.1 -0.4 -0.5
carbon source casaminos (C) -0.3 +0.6 -0.4 -0.2 -0.5
carbon source D-Glucose (C) -0.2 +0.2 -0.4 +0.1 -0.3
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 +0.2 -0.5 -0.2 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.2 -0.1 -0.2 +0.5
nf_with_fulln NF_with_fullN -0.2 +0.2 +0.4 -0.1 -0.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.1 -0.1 -0.5 +0.6
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 +0.1 -0.3 -0.2 +0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.2 -0.1 -0.3 +0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.2 -0.1 -0.3 +0.7
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 +0.0 -0.3 -0.1 +0.8
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.2 -0.0 -0.3 +0.8
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.2 -0.0 -0.4 +0.7
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 +0.3 -0.2 +0.0 +0.7
mgl MGL +0.5 -0.3 +0.0 -0.0 +0.4
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.4 +0.3 -0.4 +0.3 +1.0
carbon source Sucrose (C) +0.1 +0.3 -0.4 +0.3 +0.4
nf_with_fulln NF_with_fullN +0.2 +0.1 +0.6 -0.3 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.2 -0.2 -0.0 +0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 +0.3 -0.2 +0.0 +1.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 +0.2 +0.3 +0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.2 +0.2 +0.1 +0.7
carbon source Sucrose (C) +0.1 +0.6 +0.2 +0.4 -0.3
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.3 -0.2 -0.1 +1.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.3 +0.2 +0.1 +0.3 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 +0.2 +0.1 +0.5 +0.6
nf_with10percent_fulln NF_with10percent_fullN +0.4 +0.1 +0.3 +0.3 +0.2
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EX31_RS06350
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EX31_RS06355
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EX31_RS06365
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EX31_RS06370
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