Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS06005 and EX31_RS06010 are separated by 100 nucleotidesEX31_RS06010 and EX31_RS06015 are separated by 75 nucleotidesEX31_RS06015 and EX31_RS06020 are separated by 323 nucleotidesEX31_RS06020 and EX31_RS06025 are separated by 91 nucleotides EX31_RS06005: EX31_RS06005 - short chain dehydrogenase, at 361,462 to 362,061 _RS06005 EX31_RS06010: EX31_RS06010 - LysR family transcriptional regulator, at 362,162 to 363,049 _RS06010 EX31_RS06015: EX31_RS06015 - methyl-accepting chemotaxis protein, at 363,125 to 365,020 _RS06015 EX31_RS06020: EX31_RS06020 - hypothetical protein, at 365,344 to 366,069 _RS06020 EX31_RS06025: EX31_RS06025 - NAD(P)H-dependent oxidoreductase, at 366,161 to 366,730 _RS06025
Group Condition EX31_RS06005 EX31_RS06010 EX31_RS06015 EX31_RS06020 EX31_RS06025
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.0 -0.0 -1.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.3 +0.2 -1.0 +0.0
carbon source NLDM_metabolites (C) -0.0 -0.1 -0.2 -0.6 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 -0.1 -0.0 -0.9 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.2 -0.1 -0.7 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.1 -0.1 -0.5 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 -0.3 +0.1 -0.4 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.0 -0.1 -0.7 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.2 -0.1 -0.2 +0.0
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 -0.1 -0.1 -0.3 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.1 -0.2 -0.1 -0.3 -0.1
carbon source NLDM_metabolites (C) -0.0 -0.5 +0.1 -0.2 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -0.2 -0.2 -0.4 +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 -0.1 -0.1 -0.5 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.2 -0.1 -0.3 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 -0.1 +0.1 -0.6 +0.1
nln NLN -0.0 -0.0 +0.1 -0.6 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.1 +0.2 -0.5 +0.0
nf_with_fulln NF_with_fullN +0.1 -0.1 +0.1 -0.5 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.3 +0.1 -0.3 +0.0
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.2 -0.1 -0.4 +0.1
nf_with_fulln NF_with_fullN +0.0 +0.1 +0.1 -0.6 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.0 +0.1 -0.5 +0.0
nf_with_fulln NF_with_fullN +0.1 +0.1 +0.1 -0.5 +0.0
nf_with10percent_fulln NF_with10percent_fullN +0.1 -0.0 +0.0 -0.4 +0.1
nf_with_fulln NF_with_fullN +0.2 +0.1 +0.0 -0.5 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.0 +0.0 -0.5 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.2 +0.1 -0.3 +0.0
nf_with_fulln NF_with_fullN +0.1 +0.2 +0.0 -0.5 +0.1
nln NLN +0.2 +0.2 +0.1 -0.4 +0.1
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