Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS05905 and EX31_RS05910 are separated by 67 nucleotidesEX31_RS05910 and EX31_RS05915 are separated by 213 nucleotidesEX31_RS05915 and EX31_RS05920 are separated by 43 nucleotidesEX31_RS05920 and EX31_RS05925 overlap by 4 nucleotides EX31_RS05905: EX31_RS05905 - MFS transporter, at 336,947 to 338,233 _RS05905 EX31_RS05910: EX31_RS05910 - LacI family DNA-binding transcriptional regulator, at 338,301 to 339,335 _RS05910 EX31_RS05915: EX31_RS05915 - xylose isomerase, at 339,549 to 340,298 _RS05915 EX31_RS05920: EX31_RS05920 - MFS transporter, at 340,342 to 341,634 _RS05920 EX31_RS05925: EX31_RS05925 - glyoxylate/hydroxypyruvate reductase GhrB, at 341,631 to 342,608 _RS05925
Group Condition EX31_RS05905 EX31_RS05910 EX31_RS05915 EX31_RS05920 EX31_RS05925
carbon source D-Mannitol (C) +0.0 -1.4 -0.2 +0.0 -0.5
carbon source D-Mannitol (C) -0.1 -1.4 -0.2 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 -0.4 -0.1 +0.0 -0.4
carbon source Sucrose (C) -0.2 -0.3 -0.1 -0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.4 +0.0 +0.0 -0.4
carbon source casaminos (C) +0.0 +0.0 -0.3 -0.1 -0.4
carbon source D,L-Lactate (C) -0.2 -0.2 -0.2 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.2 -0.1 -0.1 -0.2
carbon source NLDM_metabolites (C) -0.2 -0.3 -0.1 -0.0 -0.1
carbon source D-Glucose (C) -0.1 -0.3 -0.0 -0.0 -0.2
carbon source D-Xylose (C) +0.0 -0.3 -0.3 -0.0 -0.1
nl-ccm NL-CCM -0.0 -0.4 -0.1 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 -0.2 -0.2 +0.1 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 -0.1 -0.0 +0.1 -0.4
nl-ccm NL-CCM +0.0 -0.5 -0.1 +0.1 -0.0
carbon source Sucrose (C) -0.2 -0.3 -0.1 +0.2 -0.0
carbon source D-Xylose (C) -0.1 -0.3 +0.1 +0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.3 +0.2 -0.0 -0.1
nl-ccm NL-CCM +0.0 -0.4 -0.0 +0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.2 -0.2 +0.0 +0.1
nl-ccm NL-CCM +0.0 -0.4 -0.0 +0.1 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -0.2 +0.2 +0.1 -0.1
nl-ccm NL-CCM +0.1 -0.4 +0.1 +0.2 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.2 -0.1 +0.1 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.2 -0.1 +0.2 -0.0
nf_with_fulln NF_with_fullN +0.1 +0.1 -0.0 +0.2 +0.2
nf_with_fulln NF_with_fullN +0.1 +0.2 -0.0 +0.2 +0.2
nf_with_fulln NF_with_fullN +0.1 +0.2 +0.0 +0.2 +0.1
nf_with_fulln NF_with_fullN +0.1 +0.2 -0.0 +0.3 +0.2
nf_with_fulln NF_with_fullN +0.2 +0.2 +0.1 +0.2 +0.2
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EX31_RS05905
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EX31_RS05910
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EX31_RS05920
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EX31_RS05925
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