Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS05860 and EX31_RS05865 are separated by 121 nucleotidesEX31_RS05865 and EX31_RS05870 overlap by 11 nucleotidesEX31_RS05870 and EX31_RS05875 are separated by 78 nucleotidesEX31_RS05875 and EX31_RS05880 are separated by 190 nucleotides EX31_RS05860: EX31_RS05860 - glycine--tRNA ligase subunit alpha, at 327,759 to 328,694 _RS05860 EX31_RS05865: EX31_RS05865 - type II toxin-antitoxin system RelE/ParE family toxin, at 328,816 to 329,100 _RS05865 EX31_RS05870: EX31_RS05870 - plasmid stabilization protein, at 329,090 to 329,338 _RS05870 EX31_RS05875: EX31_RS05875 - autotransporter domain-containing esterase, at 329,417 to 331,423 _RS05875 EX31_RS05880: EX31_RS05880 - DNA-3-methyladenine glycosylase I, at 331,614 to 332,186 _RS05880
Group Condition EX31_RS05860 EX31_RS05865 EX31_RS05870 EX31_RS05875 EX31_RS05880
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. -0.1 -1.0 -0.0 -0.6
nitrogen source L-Serine (N); ShewMM media; no shaking N.D. -0.1 -0.4 +0.0 -1.4
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. +0.2 -1.5 +0.0 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking N.D. -0.2 -0.8 +0.0 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking N.D. +0.0 -0.6 +0.0 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. -0.1 -0.8 +0.1 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.0 -0.3 -0.0 -0.8
nitrogen source Ammonium chloride (N); RCH2 media; no shaking N.D. -0.0 -1.0 -0.0 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking N.D. +0.2 -0.3 +0.0 -0.8
nitrogen source L-Serine (N); RCH2 media; no shaking N.D. -0.1 -1.0 -0.0 +0.4
carbon source casaminos (C) N.D. -0.2 -0.9 -0.1 +0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking N.D. +0.0 -0.7 -0.1 +0.1
carbon source D,L-Lactate (C) N.D. -0.2 +0.2 -0.1 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking N.D. +0.1 -0.4 +0.0 -0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking N.D. -0.1 +0.4 -0.1 -0.8
nitrogen source L-Serine (N); RCH2 media; shaking N.D. +0.1 +0.3 -0.0 -0.8
nitrogen source L-Glutamine (N); ShewMM media; no shaking N.D. +0.2 -0.5 -0.0 -0.1
carbon source NLDM_metabolites (C) N.D. -0.1 -0.5 -0.0 +0.3
carbon source D-Xylose (C) N.D. -0.3 +0.3 -0.1 -0.4
carbon source casaminos (C) N.D. -0.1 -0.6 -0.1 +0.6
mgl MGL N.D. +0.1 -0.4 +0.0 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking N.D. +0.1 +0.2 -0.1 -0.4
carbon source D,L-Lactate (C) N.D. -0.3 +0.0 -0.0 +0.4
nl-ccm; ambient oxygen NL-CCM; ambient oxygen N.D. -0.2 +0.3 +0.2 -0.1
mgl MGL N.D. +0.1 -0.5 +0.0 +0.6
carbon source NLDM_metabolites (C) N.D. -0.3 -0.1 -0.1 +0.7
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum N.D. +0.2 -0.1 -0.0 +0.5
carbon source Sucrose (C) N.D. -0.2 +0.7 -0.0 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum N.D. +0.2 +0.3 -0.1 +0.3
nf_with_fulln NF_with_fullN N.D. +0.1 +0.3 +0.1 +0.4
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