Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS05855 and EX31_RS05860 are separated by 7 nucleotidesEX31_RS05860 and EX31_RS05865 are separated by 121 nucleotidesEX31_RS05865 and EX31_RS05870 overlap by 11 nucleotidesEX31_RS05870 and EX31_RS05875 are separated by 78 nucleotides EX31_RS05855: EX31_RS05855 - glycine--tRNA ligase subunit beta, at 325,682 to 327,751 _RS05855 EX31_RS05860: EX31_RS05860 - glycine--tRNA ligase subunit alpha, at 327,759 to 328,694 _RS05860 EX31_RS05865: EX31_RS05865 - type II toxin-antitoxin system RelE/ParE family toxin, at 328,816 to 329,100 _RS05865 EX31_RS05870: EX31_RS05870 - plasmid stabilization protein, at 329,090 to 329,338 _RS05870 EX31_RS05875: EX31_RS05875 - autotransporter domain-containing esterase, at 329,417 to 331,423 _RS05875
Group Condition EX31_RS05855 EX31_RS05860 EX31_RS05865 EX31_RS05870 EX31_RS05875
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -1.3 N.D. -0.1 -0.8 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -1.5 N.D. -0.1 -0.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.6 N.D. -0.1 -1.0 -0.0
carbon source casaminos (C) -0.8 N.D. -0.1 -0.6 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -1.3 N.D. +0.1 -0.4 +0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -1.0 N.D. -0.0 -0.3 -0.1
carbon source D,L-Lactate (C) -1.0 N.D. -0.3 +0.0 -0.0
carbon source casaminos (C) +0.3 N.D. -0.2 -0.9 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.7 N.D. +0.2 -1.5 +0.0
carbon source NLDM_metabolites (C) +0.8 N.D. -0.1 -0.5 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +1.3 N.D. +0.0 -0.4 -0.1
nl-ccm_agar NL-CCM_agar +1.3 N.D. -0.0 -0.3 +0.0
nl-ccm NL-CCM +1.3 N.D. -0.1 -0.3 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +1.1 N.D. +0.1 -0.2 +0.1
nl-ccm NL-CCM +1.2 N.D. +0.1 -0.2 -0.0
nl-ccm_agar NL-CCM_agar +1.3 N.D. +0.0 -0.2 +0.1
nl-ccm NL-CCM +1.4 N.D. -0.1 +0.0 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +1.5 N.D. -0.1 -0.1 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +1.3 N.D. -0.0 +0.1 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.1 N.D. +0.1 +0.1 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.4 N.D. -0.1 +0.0 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +1.0 N.D. +0.2 +0.3 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.3 N.D. +0.0 +0.0 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.2 N.D. -0.2 +0.3 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +1.3 N.D. +0.1 +0.1 -0.0
nl-ccm_agar NL-CCM_agar +1.3 N.D. +0.1 +0.2 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +1.0 N.D. +0.1 +0.1 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +1.1 N.D. +0.2 +0.3 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +1.4 N.D. +0.1 +0.2 -0.1
nl-ccm NL-CCM +1.5 N.D. +0.0 +0.4 +0.0
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