Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS05835 and EX31_RS05840 are separated by 30 nucleotidesEX31_RS05840 and EX31_RS05845 are separated by 234 nucleotidesEX31_RS05845 and EX31_RS05850 are separated by 177 nucleotidesEX31_RS05850 and EX31_RS05855 are separated by 284 nucleotides EX31_RS05835: EX31_RS05835 - deoxycytidylate deaminase, at 321,714 to 323,258 _RS05835 EX31_RS05840: EX31_RS05840 - hypothetical protein, at 323,289 to 323,468 _RS05840 EX31_RS05845: EX31_RS05845 - DsbA family protein, at 323,703 to 324,497 _RS05845 EX31_RS05850: EX31_RS05850 - DUF3053 domain-containing protein, at 324,675 to 325,397 _RS05850 EX31_RS05855: EX31_RS05855 - glycine--tRNA ligase subunit beta, at 325,682 to 327,751 _RS05855
Group Condition EX31_RS05835 EX31_RS05840 EX31_RS05845 EX31_RS05850 EX31_RS05855
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.1 -0.0 -0.0 -1.5
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.0 -0.0 +0.0 -0.0 -1.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 +0.2 -0.0 -0.1 -1.3
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.2 -0.1 -0.3 -1.0
carbon source D,L-Lactate (C) +0.0 +0.2 +0.2 -0.0 -1.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.2 -0.1 -0.0 +1.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 -0.2 +0.0 +0.1 +0.8
nl-ccm_agar NL-CCM_agar -0.1 -0.2 -0.1 -0.1 +1.3
nl-ccm NL-CCM +0.0 -0.1 -0.1 +0.1 +1.0
nl-ccm NL-CCM -0.0 -0.2 -0.1 -0.0 +1.3
nl-ccm_agar NL-CCM_agar +0.0 -0.0 -0.1 +0.0 +1.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 -0.1 +0.0 +0.1 +1.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.1 +0.0 -0.1 +1.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 -0.0 -0.0 +0.1 +1.1
nl-ccm NL-CCM +0.0 -0.1 -0.0 -0.0 +1.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.2 +0.1 +0.0 +1.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.0 +0.0 +0.1 +1.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 +0.3 -0.0 -0.1 +1.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.1 +0.1 +0.2 +1.2
nl-ccm_agar NL-CCM_agar -0.0 -0.1 +0.1 +0.0 +1.3
nl-ccm NL-CCM +0.0 +0.0 -0.1 +0.0 +1.4
nl-ccm_agar NL-CCM_agar -0.0 +0.2 -0.1 -0.0 +1.3
nl-ccm NL-CCM -0.1 +0.0 -0.0 -0.1 +1.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.1 +0.2 +0.2 +1.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.1 +0.0 +0.1 +1.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 -0.1 +0.1 +0.2 +1.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.1 +0.1 +0.1 +1.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.1 -0.1 +0.2 +1.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.0 +0.1 -0.0 +0.0 +1.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 +0.0 -0.0 +0.2 +1.5
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EX31_RS05835
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EX31_RS05840
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EX31_RS05855
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