Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS05545 and EX31_RS05550 overlap by 1 nucleotidesEX31_RS05550 and EX31_RS05555 are separated by 19 nucleotidesEX31_RS05555 and EX31_RS05560 are separated by 211 nucleotidesEX31_RS05560 and EX31_RS05565 overlap by 32 nucleotides EX31_RS05545: EX31_RS05545 - ABC transporter ATP-binding protein, at 264,143 to 265,009 _RS05545 EX31_RS05550: EX31_RS05550 - ABC transporter ATP-binding protein, at 265,009 to 265,791 _RS05550 EX31_RS05555: EX31_RS05555 - MmgE/PrpD family protein, at 265,811 to 267,190 _RS05555 EX31_RS05560: EX31_RS05560 - ParD-like family protein, at 267,402 to 267,638 _RS05560 EX31_RS05565: EX31_RS05565 - type II toxin-antitoxin system RelE/ParE family toxin, at 267,607 to 267,936 _RS05565
Group Condition EX31_RS05545 EX31_RS05550 EX31_RS05555 EX31_RS05560 EX31_RS05565
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.3 +0.1 -0.2 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.2 -0.0 -0.2 -0.2
mgl MGL +0.1 -0.3 -0.1 -0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.1 -0.0 -0.3 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 +0.1 -0.1 +0.0 -0.2
carbon source casaminos (C) -0.1 -0.1 -0.2 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.1 -0.2 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.1 -0.0 -0.2 -0.1
nf_with_fulln NF_with_fullN +0.3 -0.2 -0.1 -0.2 -0.2
nf_with_fulln NF_with_fullN +0.3 -0.2 -0.0 -0.2 -0.1
nf_with_fulln NF_with_fullN +0.3 -0.2 +0.0 -0.2 -0.2
nf_with_fulln NF_with_fullN +0.4 -0.1 -0.0 -0.2 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.0 +0.2 -0.1 -0.2 +0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 -0.2 +0.1 -0.3 +0.0
nf_with_fulln NF_with_fullN +0.4 -0.1 +0.1 -0.3 -0.2
carbon source Sucrose (C) +0.0 -0.2 -0.2 +0.3 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.1 -0.0 -0.2 +0.2
nln NLN +0.4 +0.0 -0.0 -0.3 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.1 +0.1 -0.3 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -0.3 -0.1 +0.1 +0.1
carbon source NLDM_metabolites (C) -0.2 +0.1 -0.1 +0.0 +0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 -0.1 +0.1 -0.2 +0.0
nf_with_fulln NF_with_fullN +0.3 -0.1 +0.1 -0.0 -0.1
carbon source NLDM_metabolites (C) -0.0 +0.2 -0.2 +0.5 -0.3
carbon source D,L-Lactate (C) +0.2 +0.3 -0.0 -0.4 +0.1
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 +0.0 +0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.3 -0.0 +0.0 +0.2 -0.1
nl-ccm; vial NL-CCM; vial +0.2 -0.1 -0.0 +0.5 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.3 +0.2 -0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.2 +0.1 +0.3 +0.1
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