Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS04900 and EX31_RS04905 are separated by 5 nucleotidesEX31_RS04905 and EX31_RS04910 are separated by 307 nucleotidesEX31_RS04910 and EX31_RS04915 are separated by 220 nucleotidesEX31_RS04915 and EX31_RS04920 are separated by 46 nucleotides EX31_RS04900: EX31_RS04900 - triphosphoribosyl-dephospho-CoA synthase, at 105,548 to 106,405 _RS04900 EX31_RS04905: EX31_RS04905 - malonate decarboxylase subunit alpha, at 106,411 to 108,072 _RS04905 EX31_RS04910: EX31_RS04910 - DUF1471 domain-containing protein, at 108,380 to 108,649 _RS04910 EX31_RS04915: EX31_RS04915 - pimeloyl-ACP methyl ester esterase BioH, at 108,870 to 109,652 _RS04915 EX31_RS04920: EX31_RS04920 - DNA utilization protein GntX, at 109,699 to 110,388 _RS04920
Group Condition EX31_RS04900 EX31_RS04905 EX31_RS04910 EX31_RS04915 EX31_RS04920
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 -0.1 -0.1 -0.1 -0.4
nf_with_fulln NF_with_fullN -0.2 -0.1 -0.0 -0.2 -0.1
nf_with_fulln NF_with_fullN -0.3 -0.1 -0.1 -0.1 -0.1
nf_with_fulln NF_with_fullN -0.2 -0.1 -0.1 -0.3 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.1 -0.1 -0.1 -0.3 -0.1
nln NLN -0.0 -0.1 -0.1 -0.2 -0.0
nf_with_fulln NF_with_fullN -0.1 -0.1 -0.1 -0.1 -0.0
carbon source NLDM_metabolites (C) +0.0 -0.1 -0.0 -0.1 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.0 -0.1 -0.1 -0.3
carbon source D-Xylose (C) +0.1 -0.0 +0.0 -0.2 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 -0.1 -0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 -0.1 -0.3 +0.1 -0.0
mgl MGL -0.0 +0.0 -0.2 -0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.0 -0.0 -0.3 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 -0.1 -0.1 +0.1 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 -0.1 +0.1 -0.2 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.1 -0.1 -0.2 +0.1
mgl MGL -0.0 -0.1 -0.0 -0.2 +0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 +0.0 +0.3 -0.0 -0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.0 -0.2 -0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 +0.0 +0.2 -0.3 -0.1
carbon source casaminos (C) +0.2 +0.1 +0.1 -0.2 +0.1
carbon source NLDM_metabolites (C) +0.3 +0.0 +0.2 -0.1 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.0 +0.2 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.0 +0.2 +0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.1 +0.1 +0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.0 +0.0 +0.2 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.0 +0.2 +0.2 +0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 -0.0 +0.2 +0.1 +0.1
carbon source casaminos (C) +0.2 +0.1 +0.2 +0.0 +0.1
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EX31_RS04900
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EX31_RS04905
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EX31_RS04920
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