Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS04825 and EX31_RS04830 are separated by 56 nucleotidesEX31_RS04830 and EX31_RS04835 are separated by 231 nucleotidesEX31_RS04835 and EX31_RS04840 are separated by 111 nucleotidesEX31_RS04840 and EX31_RS04845 are separated by 399 nucleotides EX31_RS04825: EX31_RS04825 - penicillin-binding protein 1C, at 84,375 to 86,744 _RS04825 EX31_RS04830: EX31_RS04830 - alpha-2-macroglobulin family protein, at 86,801 to 92,818 _RS04830 EX31_RS04835: EX31_RS04835 - transcription elongation factor GreB, at 93,050 to 93,523 _RS04835 EX31_RS04840: EX31_RS04840 - RNA-binding transcriptional accessory protein, at 93,635 to 95,965 _RS04840 EX31_RS04845: EX31_RS04845 - ferrous iron transporter A, at 96,365 to 96,589 _RS04845
Group Condition EX31_RS04825 EX31_RS04830 EX31_RS04835 EX31_RS04840 EX31_RS04845
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.0 -0.1 -0.2 -0.1 -0.7
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 +0.0 -0.1 -0.1 -0.8
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 +0.1 -0.2 -0.1 -0.7
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.0 -0.0 -0.0 -0.7
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 +0.0 +0.0 +0.0 -0.6
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 -0.0 -0.2 +0.0 -0.4
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.1 +0.0 +0.0 -0.8
nl-ccm_agar NL-CCM_agar -0.1 -0.0 -0.1 +0.0 -0.4
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.0 +0.0 +0.1 +0.2 -0.8
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 +0.1 -0.1 -0.0 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.0 -0.3 -0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 +0.0 -0.2 -0.3 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.1 -0.0 -0.1 -0.4
nl-ccm; vial NL-CCM; vial +0.1 -0.0 +0.0 +0.1 -0.4
mgl MGL +0.1 +0.0 -0.3 -0.1 +0.1
nl-ccm NL-CCM -0.0 -0.0 -0.3 +0.1 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 +0.0 +0.2 +0.0 -0.4
carbon source casaminos (C) +0.0 +0.1 -0.3 +0.1 +0.2
carbon source D,L-Lactate (C) +0.1 +0.1 -0.2 +0.1 +0.1
nf_with_fulln NF_with_fullN +0.0 -0.0 +0.0 -0.1 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 -0.0 -0.1 +0.1 +0.4
nl-ccm; low oxygen NL-CCM; low oxygen +0.0 -0.0 -0.0 -0.1 +0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 +0.0 -0.1 -0.0 +0.5
carbon source D-Xylose (C) -0.0 +0.0 -0.2 +0.1 +0.6
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.0 -0.0 -0.0 +0.6
mgl MGL -0.1 -0.0 +0.1 -0.0 +0.5
carbon source NLDM_metabolites (C) -0.0 -0.0 +0.0 +0.1 +0.5
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.0 +0.0 -0.0 +0.4
carbon source D-Glucose (C) +0.1 +0.1 -0.1 +0.1 +0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 -0.0 +0.1 +0.0 +0.5
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