Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS04785 and EX31_RS04790 overlap by 4 nucleotidesEX31_RS04790 and EX31_RS04795 are separated by 209 nucleotidesEX31_RS04795 and EX31_RS04800 overlap by 4 nucleotidesEX31_RS04800 and EX31_RS04805 are separated by 589 nucleotides EX31_RS04785: EX31_RS04785 - plasmid stabilization protein, at 75,714 to 75,926 _RS04785 EX31_RS04790: EX31_RS04790 - twitching motility protein PilT, at 75,923 to 76,402 _RS04790 EX31_RS04795: EX31_RS04795 - two-component system sensor histidine kinase EnvZ, at 76,612 to 77,973 _RS04795 EX31_RS04800: EX31_RS04800 - two-component system response regulator OmpR, at 77,970 to 78,689 _RS04800 EX31_RS04805: EX31_RS04805 - type 1 fimbrial protein, at 79,279 to 79,827 _RS04805
Group Condition EX31_RS04785 EX31_RS04790 EX31_RS04795 EX31_RS04800 EX31_RS04805
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.2 +0.6 -0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 -0.2 -0.2 +0.6 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.0 +0.3 +0.5 -0.6
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.2 -0.2 +0.8 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.0 +0.0 +0.3 +0.6 -0.5
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 +0.3 +0.6 -0.4
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.0 +0.4 +0.6 -0.3
nln NLN +0.0 -0.2 +0.4 +0.7 -0.1
nln NLN +0.1 -0.0 +0.3 +0.7 -0.3
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.2 +0.4 +0.5 -0.5
carbon source D-Mannitol (C) +0.0 -0.3 +0.3 +0.8 +0.0
nln NLN -0.1 -0.0 +0.3 +0.9 -0.2
nln NLN +0.1 -0.0 +0.3 +0.8 -0.3
carbon source D-Glucose (C) -0.2 -0.2 +0.4 +0.9 +0.0
carbon source D-Mannitol (C) -0.2 -0.1 +0.4 +0.8 -0.1
carbon source D-Xylose (C) -0.1 -0.1 +0.4 +0.7 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.1 -0.2 +0.8 +0.2
nln NLN +0.2 -0.1 +0.3 +0.8 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.4 -0.1 +0.5 +0.4 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.1 +0.2 -0.1 +1.0 +0.2
nln NLN +0.2 +0.1 +0.4 +0.8 -0.3
carbon source Sucrose (C) -0.2 -0.0 +0.3 +1.0 +0.1
carbon source D-Xylose (C) -0.2 +0.2 +0.4 +0.9 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.5 -0.0 -0.2 +1.0 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.6 +0.1 +0.4 +0.3 -0.0
carbon source Sucrose (C) +0.3 -0.1 +0.3 +0.8 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 -0.0 +0.5 +0.6 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 +0.2 +0.1 +0.8 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 -0.0 +0.2 +0.9 +0.4
nitrogen source L-Serine (N); RCH2 media; no shaking +0.6 +0.2 +0.3 +0.7 +0.0
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EX31_RS04785
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EX31_RS04790
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EX31_RS04805
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