Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS04185 and EX31_RS04190 are separated by 136 nucleotidesEX31_RS04190 and EX31_RS04195 are separated by 223 nucleotidesEX31_RS04195 and EX31_RS04200 overlap by 26 nucleotidesEX31_RS04200 and EX31_RS04205 are separated by 259 nucleotides EX31_RS04185: EX31_RS04185 - rhamnulose-1-phosphate aldolase, at 360,787 to 361,611 _RS04185 EX31_RS04190: EX31_RS04190 - lactaldehyde reductase, at 361,748 to 362,896 _RS04190 EX31_RS04195: EX31_RS04195 - L-rhamnose mutarotase, at 363,120 to 363,434 _RS04195 EX31_RS04200: EX31_RS04200 - YgiQ family radical SAM protein, at 363,409 to 365,583 _RS04200 EX31_RS04205: EX31_RS04205 - hypothetical protein, at 365,843 to 366,574 _RS04205
Group Condition EX31_RS04185 EX31_RS04190 EX31_RS04195 EX31_RS04200 EX31_RS04205
carbon source NLDM_metabolites (C) -0.1 -0.0 -0.6 -0.1 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 -0.2 -0.1 -0.1 -0.4
carbon source D-Xylose (C) -0.4 -0.0 +0.1 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.2 -0.2 -0.1 -0.1 -0.2
carbon source D,L-Lactate (C) -0.3 +0.1 -0.2 -0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 -0.2 -0.0 -0.0 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 -0.2 -0.2 +0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.1 +0.1 -0.0 -0.2
carbon source D,L-Lactate (C) +0.2 -0.2 -0.2 -0.1 -0.1
carbon source casaminos (C) -0.1 -0.1 +0.2 -0.1 -0.3
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 -0.3 +0.2 -0.1 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.2 +0.0 +0.3 -0.0 -0.3
carbon source NLDM_metabolites (C) -0.1 -0.2 +0.2 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.1 -0.4 +0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.2 +0.2 -0.0 -0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 -0.1 +0.2 -0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 -0.1 +0.1 -0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.1 +0.0 -0.3
nf_with_fulln NF_with_fullN +0.2 -0.1 -0.1 +0.0 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 -0.2 +0.3 -0.0 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 +0.1 -0.1 +0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.1 -0.1 +0.1 -0.2
mgl MGL +0.1 +0.1 +0.1 +0.1 -0.2
nl-ccm; vial NL-CCM; vial +0.4 +0.1 -0.2 +0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.1 -0.2 +0.1 +0.0
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.1 +0.1 +0.1 -0.2
nln NLN +0.2 -0.0 +0.2 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 +0.1 -0.2 -0.0 +0.1
nf_with_fulln NF_with_fullN +0.3 -0.1 +0.1 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 +0.2 -0.1 +0.0 +0.0
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