Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS04105 and EX31_RS04110 are separated by 231 nucleotidesEX31_RS04110 and EX31_RS04115 overlap by 32 nucleotidesEX31_RS04115 and EX31_RS04120 are separated by 139 nucleotidesEX31_RS04120 and EX31_RS04125 are separated by 4 nucleotides EX31_RS04105: EX31_RS04105 - helix-turn-helix domain-containing protein, at 347,250 to 347,573 _RS04105 EX31_RS04110: EX31_RS04110 - ribosomal protein S18-alanine N-acetyltransferase, at 347,805 to 348,248 _RS04110 EX31_RS04115: EX31_RS04115 - DNA polymerase III subunit psi, at 348,217 to 348,630 _RS04115 EX31_RS04120: EX31_RS04120 - 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC, at 348,770 to 349,816 _RS04120 EX31_RS04125: EX31_RS04125 - aldo/keto reductase, at 349,821 to 350,813 _RS04125
Group Condition EX31_RS04105 EX31_RS04110 EX31_RS04115 EX31_RS04120 EX31_RS04125
mgl MGL -3.5 -0.0 N.D. -0.2 -0.0
nln NLN -3.7 +0.1 N.D. -0.0 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -3.2 +0.1 N.D. -0.3 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -2.9 -0.3 N.D. -0.3 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -3.1 -0.0 N.D. -0.2 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -3.1 -0.0 N.D. -0.2 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -3.1 -0.1 N.D. -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -3.0 -0.0 N.D. -0.2 -0.1
nf_with_fulln NF_with_fullN -2.9 +0.0 N.D. -0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.4 -0.2 N.D. -0.3 +0.0
nln NLN -2.7 -0.0 N.D. -0.0 +0.1
carbon source D-Xylose (C) -2.4 -0.0 N.D. -0.3 -0.0
nitrogen source L-Glutamine (N); RCH2 media; shaking -2.3 -0.3 N.D. -0.2 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -3.0 -0.1 N.D. +0.4 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.4 -0.1 N.D. -0.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.1 -0.2 N.D. -0.3 +0.1
nf_with_fulln NF_with_fullN -2.7 -0.1 N.D. +0.0 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -2.3 +0.0 N.D. -0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -2.4 +0.0 N.D. -0.1 +0.0
nf_with10percent_fulln NF_with10percent_fullN -2.7 +0.0 N.D. +0.1 +0.1
carbon source D-Xylose (C) -2.0 -0.1 N.D. -0.2 -0.2
nf_with10percent_fulln NF_with10percent_fullN -2.4 +0.0 N.D. +0.1 -0.0
nln NLN -2.4 +0.0 N.D. -0.0 +0.1
carbon source D,L-Lactate (C) -2.2 +0.1 N.D. -0.1 +0.0
nln NLN -2.2 +0.1 N.D. +0.0 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -1.9 +0.1 N.D. -0.1 -0.0
nf_with10percent_fulln NF_with10percent_fullN -2.0 -0.1 N.D. +0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN -2.0 +0.0 N.D. +0.1 +0.1
nf_with10percent_fulln NF_with10percent_fullN -2.0 +0.0 N.D. +0.2 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -1.7 -0.2 N.D. +0.4 +0.1
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EX31_RS04125
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