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Protein
Homologs
Fitness for 5 genes in
Rahnella sp. WP5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX31_RS03835 and EX31_RS03840 are separated by 477 nucleotides
EX31_RS03840 and EX31_RS03845 are separated by 690 nucleotides
EX31_RS03845 and EX31_RS03850 are separated by 160 nucleotides
EX31_RS03850 and EX31_RS03855 are separated by 65 nucleotides
EX31_RS03835: EX31_RS03835 - glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit, at 278,805 to 279,956
_RS03835
EX31_RS03840: EX31_RS03840 - 4-hydroxy-tetrahydrodipicolinate reductase, at 280,434 to 281,255
_RS03840
EX31_RS03845: EX31_RS03845 - porin, at 281,946 to 283,091
_RS03845
EX31_RS03850: EX31_RS03850 - SMP-30/gluconolactonase/LRE family protein, at 283,252 to 284,127
_RS03850
EX31_RS03855: EX31_RS03855 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 284,193 to 285,146
_RS03855
Group
Condition
EX31
_RS03835
EX31
_RS03840
EX31
_RS03845
EX31
_RS03850
EX31
_RS03855
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
-5.4
N.D.
+0.0
-0.2
N.D.
nitrogen source
Ammonium chloride (N); RCH2 media; no shaking
-5.4
N.D.
+0.1
-0.2
N.D.
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
-5.2
N.D.
+0.1
-0.3
N.D.
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
-5.5
N.D.
+0.0
+0.2
N.D.
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
-5.1
N.D.
+0.1
-0.2
N.D.
nitrogen source
L-Glutamine (N); RCH2 media; shaking
-4.9
N.D.
+0.0
-0.1
N.D.
nf_with_fulln
NF_with_fullN
-5.0
N.D.
+0.0
-0.1
N.D.
nitrogen source
Ammonium chloride (N); RCH2 media; no shaking
-4.9
N.D.
+0.0
-0.1
N.D.
carbon source
D-Mannitol (C)
-4.8
N.D.
-0.0
-0.2
N.D.
nitrogen source
Ammonium chloride (N); RCH2 media; shaking
-5.1
N.D.
+0.0
+0.1
N.D.
nitrogen source
Ammonium chloride (N); ShewMM media; shaking
-4.9
N.D.
+0.1
-0.0
N.D.
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
-4.8
N.D.
+0.0
-0.2
N.D.
nitrogen source
L-Glutamine (N); RCH2 media; shaking
-4.9
N.D.
+0.0
+0.0
N.D.
nitrogen source
L-Glutamine (N); RCH2 media; no shaking
-4.7
N.D.
+0.1
-0.2
N.D.
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
-4.7
N.D.
-0.0
-0.0
N.D.
carbon source
Sucrose (C)
-4.7
N.D.
+0.1
-0.1
N.D.
nitrogen source
L-Glutamine (N); ShewMM media; shaking
-4.6
N.D.
-0.0
-0.0
N.D.
nitrogen source
Ammonium chloride (N); RCH2 media; no shaking
-4.7
N.D.
+0.1
+0.0
N.D.
nitrogen source
Ammonium chloride (N); ShewMM media; shaking
-4.6
N.D.
-0.0
+0.0
N.D.
nf_with_fulln
NF_with_fullN
-4.3
N.D.
+0.0
-0.3
N.D.
nitrogen source
L-Serine (N); RCH2 media; shaking
-4.7
N.D.
+0.1
+0.1
N.D.
nf_with_fulln
NF_with_fullN
-4.6
N.D.
+0.0
+0.0
N.D.
nitrogen source
Ammonium chloride (N); ShewMM media; shaking
-4.9
N.D.
+0.2
+0.1
N.D.
nitrogen source
L-Glutamine (N); ShewMM media; shaking
-4.7
N.D.
+0.2
+0.0
N.D.
nitrogen source
Ammonium chloride (N); RCH2 media; shaking
-4.7
N.D.
+0.1
+0.1
N.D.
nitrogen source
L-Serine (N); ShewMM media; no shaking
-4.8
N.D.
+0.0
+0.3
N.D.
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
-4.7
N.D.
+0.0
+0.2
N.D.
nitrogen source
L-Glutamine (N); ShewMM media; shaking
-4.5
N.D.
+0.0
+0.1
N.D.
nitrogen source
Ammonium chloride (N); RCH2 media; shaking
-4.4
N.D.
+0.2
-0.1
N.D.
carbon source
D,L-Lactate (C)
-4.3
N.D.
+0.1
+0.3
N.D.
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