Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03800 and EX31_RS03805 overlap by 10 nucleotidesEX31_RS03805 and EX31_RS03810 are separated by 105 nucleotidesEX31_RS03810 and EX31_RS03815 are separated by 55 nucleotidesEX31_RS03815 and EX31_RS03820 overlap by 8 nucleotides EX31_RS03800: EX31_RS03800 - threonine/serine exporter, at 268,072 to 268,542 _RS03800 EX31_RS03805: EX31_RS03805 - threonine/serine exporter ThrE family protein, at 268,533 to 269,342 _RS03805 EX31_RS03810: EX31_RS03810 - LysE family translocator, at 269,448 to 270,062 _RS03810 EX31_RS03815: EX31_RS03815 - glutathione-regulated potassium-efflux system protein KefC, at 270,118 to 271,971 _RS03815 EX31_RS03820: EX31_RS03820 - glutathione-regulated potassium-efflux system oxidoreductase KefF, at 271,964 to 272,518 _RS03820
Group Condition EX31_RS03800 EX31_RS03805 EX31_RS03810 EX31_RS03815 EX31_RS03820
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.1 -0.2 -0.1 -0.4
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.3 -0.1 +0.0 -0.2
mgl MGL +0.0 -0.2 -0.1 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.2 -0.1 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.0 +0.0 -0.0 -0.3 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 -0.2 -0.1 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -0.2 -0.0 -0.2 +0.1
nl-ccm NL-CCM +0.1 -0.1 -0.1 -0.1 -0.1
carbon source D-Xylose (C) -0.1 -0.4 -0.1 +0.2 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.0 +0.1 -0.2 -0.4
nf_with_fulln NF_with_fullN -0.0 -0.2 -0.1 -0.1 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.1 -0.0 +0.0 -0.3
nl-ccm; low oxygen NL-CCM; low oxygen -0.3 -0.2 -0.0 -0.0 +0.3
carbon source D,L-Lactate (C) -0.2 +0.3 -0.1 +0.0 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.1 -0.2 -0.2 +0.2
mgl MGL -0.1 -0.3 -0.0 +0.0 +0.3
nln NLN -0.2 -0.1 -0.0 -0.0 +0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.3 -0.1 -0.0 -0.2
nl-ccm_agar NL-CCM_agar -0.1 -0.1 -0.1 +0.1 +0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 -0.2 +0.1 +0.2 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 +0.1 -0.1 +0.1 +0.3
carbon source D,L-Lactate (C) +0.2 +0.1 -0.1 +0.0 +0.1
carbon source D-Mannitol (C) +0.1 +0.1 -0.1 +0.3 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.0 -0.0 -0.0 +0.2 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.1 +0.2 +0.2 -0.1
carbon source casaminos (C) +0.2 +0.2 -0.0 +0.2 -0.0
carbon source D-Glucose (C) +0.1 +0.3 -0.1 +0.1 +0.1
carbon source Sucrose (C) +0.1 +0.2 -0.0 +0.1 +0.2
carbon source Sucrose (C) +0.1 +0.3 -0.0 +0.2 +0.3
carbon source NLDM_metabolites (C) +0.1 +0.6 -0.1 +0.2 +0.2
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