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Homologs
Fitness for 5 genes in
Rahnella sp. WP5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX31_RS03785 and EX31_RS03790 are separated by 5 nucleotides
EX31_RS03790 and EX31_RS03795 are separated by 82 nucleotides
EX31_RS03795 and EX31_RS03800 are separated by 269 nucleotides
EX31_RS03800 and EX31_RS03805 overlap by 10 nucleotides
EX31_RS03785: EX31_RS03785 - Co2+/Mg2+ efflux protein ApaG, at 265,997 to 266,374
_RS03785
EX31_RS03790: EX31_RS03790 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 266,380 to 267,234
_RS03790
EX31_RS03795: EX31_RS03795 - type 3 dihydrofolate reductase, at 267,317 to 267,802
_RS03795
EX31_RS03800: EX31_RS03800 - threonine/serine exporter, at 268,072 to 268,542
_RS03800
EX31_RS03805: EX31_RS03805 - threonine/serine exporter ThrE family protein, at 268,533 to 269,342
_RS03805
Group
Condition
EX31
_RS03785
EX31
_RS03790
EX31
_RS03795
EX31
_RS03800
EX31
_RS03805
mgl
MGL
+0.1
-4.6
N.D.
-0.0
-0.0
mgl
MGL
+0.0
-4.6
N.D.
+0.0
+0.1
mgl
MGL
+0.1
-4.7
N.D.
+0.2
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
+0.2
-4.2
N.D.
-0.1
-0.2
nf_with_fulln
NF_with_fullN
-0.0
-3.9
N.D.
+0.1
-0.1
carbon source
D-Xylose (C)
-0.4
-3.1
N.D.
-0.1
-0.4
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.1
-3.4
N.D.
-0.3
-0.2
nf_with_fulln
NF_with_fullN
+0.1
-3.6
N.D.
+0.0
-0.1
nln
NLN
+0.1
-3.6
N.D.
-0.0
-0.0
nf_with_fulln
NF_with_fullN
-0.1
-3.3
N.D.
-0.0
-0.1
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-3.6
N.D.
-0.1
-0.0
nl-ccm; high oxygen
NL-CCM; high oxygen
-0.1
-3.6
N.D.
+0.0
+0.1
mgl
MGL
+0.1
-3.4
N.D.
+0.0
-0.2
nf_with_fulln
NF_with_fullN
-0.1
-3.3
N.D.
-0.0
-0.0
nf_with10percent_fulln
NF_with10percent_fullN
+0.0
-3.1
N.D.
-0.2
-0.0
nf_with_fulln
NF_with_fullN
+0.0
-3.0
N.D.
-0.0
-0.2
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
+0.0
-3.0
N.D.
-0.0
-0.2
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.1
-3.0
N.D.
-0.2
-0.1
nln
NLN
+0.1
-3.0
N.D.
-0.0
-0.1
carbon source
D-Xylose (C)
-0.3
-2.9
N.D.
+0.0
+0.1
nitrogen source
Ammonium chloride (N); ShewMM media; no shaking
-0.3
-2.5
N.D.
+0.0
-0.2
nitrogen source
L-Serine (N); RCH2 media; no shaking
-0.2
-2.4
N.D.
-0.2
-0.3
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.2
-3.2
N.D.
+0.0
-0.0
nf_with_fulln
NF_with_fullN
+0.1
-2.9
N.D.
-0.0
-0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.1
-2.9
N.D.
-0.0
-0.1
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
+0.2
-2.8
N.D.
-0.2
-0.2
mgl
MGL
+0.2
-2.7
N.D.
-0.1
-0.3
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.3
-2.8
N.D.
-0.1
-0.1
nl-ccm; ambient oxygen
NL-CCM; ambient oxygen
+0.2
-2.3
N.D.
-0.2
-0.2
carbon source
D,L-Lactate (C)
+0.8
-2.4
N.D.
+0.2
+0.1
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