Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03735 and EX31_RS03740 are separated by 301 nucleotidesEX31_RS03740 and EX31_RS03745 are separated by 211 nucleotidesEX31_RS03745 and EX31_RS03750 are separated by 66 nucleotidesEX31_RS03750 and EX31_RS03755 are separated by 205 nucleotides EX31_RS03735: EX31_RS03735 - DedA family protein, at 248,018 to 248,785 _RS03735 EX31_RS03740: EX31_RS03740 - DNA polymerase II, at 249,087 to 251,429 _RS03740 EX31_RS03745: EX31_RS03745 - RNA polymerase-associated protein RapA, at 251,641 to 254,538 _RS03745 EX31_RS03750: EX31_RS03750 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 254,605 to 255,306 _RS03750 EX31_RS03755: EX31_RS03755 - autotransporter outer membrane beta-barrel domain-containing protein, at 255,512 to 259,333 _RS03755
Group Condition EX31_RS03735 EX31_RS03740 EX31_RS03745 EX31_RS03750 EX31_RS03755
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 -0.0 -0.7 -0.2 -0.1
carbon source D-Xylose (C) -0.1 -0.2 -0.2 -0.3 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 +0.0 -0.6 -0.4 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 -0.0 -0.6 -0.3 +0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 -0.0 -0.5 -0.2 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.1 -0.6 -0.1 +0.1
nf_with_fulln NF_with_fullN -0.2 +0.0 -0.2 -0.2 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 +0.0 -0.3 -0.3 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.0 +0.1 -0.4 -0.0
mgl MGL +0.1 +0.0 -0.3 -0.3 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.1 -0.3 -0.1 -0.0
carbon source NLDM_metabolites (C) -0.2 -0.1 -0.3 +0.1 +0.0
carbon source D-Xylose (C) +0.1 -0.1 -0.3 -0.1 -0.0
carbon source casaminos (C) -0.4 -0.1 -0.1 +0.0 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.0 -0.2 -0.3 -0.0
nln NLN -0.1 +0.1 -0.0 -0.3 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.1 -0.4 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.4 +0.0 +0.1 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.0 -0.2 -0.2 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen -0.4 +0.1 +0.0 +0.1 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 +0.0 -0.4 +0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.0 -0.1 -0.3 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 +0.0 -0.1 -0.2 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.2 -0.3 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 +0.1 -0.2 -0.1 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 -0.0 -0.5 +0.3 +0.0
carbon source Sucrose (C) +0.1 +0.1 -0.4 +0.2 +0.0
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.1 +0.2 -0.1 +0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.1 +0.3 -0.1 -0.0
carbon source NLDM_metabolites (C) +0.4 -0.1 -0.2 +0.4 +0.0
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