Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03450 and EX31_RS03455 are separated by 22 nucleotidesEX31_RS03455 and EX31_RS03460 are separated by 24 nucleotidesEX31_RS03460 and EX31_RS03465 are separated by 330 nucleotidesEX31_RS03465 and EX31_RS03475 are separated by 208 nucleotides EX31_RS03450: EX31_RS03450 - glycerophosphodiester phosphodiesterase, at 179,674 to 180,504 _RS03450 EX31_RS03455: EX31_RS03455 - ROK family transcriptional regulator, at 180,527 to 181,639 _RS03455 EX31_RS03460: EX31_RS03460 - glycerophosphodiester phosphodiesterase, at 181,664 to 183,994 _RS03460 EX31_RS03465: EX31_RS03465 - dihydrolipoyl dehydrogenase, at 184,325 to 185,752 _RS03465 EX31_RS03475: EX31_RS03475 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 185,961 to 187,859 _RS03475
Group Condition EX31_RS03450 EX31_RS03455 EX31_RS03460 EX31_RS03465 EX31_RS03475
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.2 -0.2 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.3 -0.1 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.3 -0.1 N.D. N.D.
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.2 -0.1 N.D. N.D.
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.3 -0.1 N.D. N.D.
nln NLN +0.1 +0.2 -0.1 N.D. N.D.
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.3 -0.1 N.D. N.D.
nf_with_fulln NF_with_fullN +0.2 +0.2 -0.1 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 +0.4 -0.1 N.D. N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.4 -0.1 N.D. N.D.
carbon source Sucrose (C) +0.2 +0.1 +0.0 N.D. N.D.
nl-ccm_agar NL-CCM_agar +0.0 +0.3 +0.1 N.D. N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.0 +0.3 +0.1 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; shaking +0.0 +0.2 +0.2 N.D. N.D.
carbon source casaminos (C) +0.0 +0.2 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.1 +0.1 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.2 +0.2 N.D. N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.2 +0.0 +0.2 N.D. N.D.
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 +0.2 +0.2 N.D. N.D.
carbon source D,L-Lactate (C) +0.0 +0.3 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.2 +0.2 N.D. N.D.
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.2 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 +0.2 +0.1 N.D. N.D.
carbon source D-Mannitol (C) -0.0 +0.4 +0.2 N.D. N.D.
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 +0.2 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.2 +0.1 N.D. N.D.
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.2 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.3 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.3 +0.1 N.D. N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.3 +0.2 N.D. N.D.
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EX31_RS03475
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