Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03395 and EX31_RS03400 are separated by 76 nucleotidesEX31_RS03400 and EX31_RS03410 are separated by 706 nucleotidesEX31_RS03410 and EX31_RS03415 are separated by 131 nucleotidesEX31_RS03415 and EX31_RS03420 are separated by 8 nucleotides EX31_RS03395: EX31_RS03395 - YacL family protein, at 166,700 to 167,065 _RS03395 EX31_RS03400: EX31_RS03400 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 167,142 to 169,739 _RS03400 EX31_RS03410: EX31_RS03410 - type 1 fimbrial protein, at 170,446 to 171,306 _RS03410 EX31_RS03415: EX31_RS03415 - fimbrial biogenesis outer membrane usher protein, at 171,438 to 173,951 _RS03415 EX31_RS03420: EX31_RS03420 - molecular chaperone, at 173,960 to 174,673 _RS03420
Group Condition EX31_RS03395 EX31_RS03400 EX31_RS03410 EX31_RS03415 EX31_RS03420
nf_with_fulln NF_with_fullN +0.3 -2.8 +0.1 -0.0 -0.1
nf_with_fulln NF_with_fullN +0.2 -2.7 +0.1 -0.0 +0.0
nf_with_fulln NF_with_fullN +0.0 -2.4 -0.0 +0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.8 -1.7 +0.2 -0.0 +0.0
nf_with_fulln NF_with_fullN +0.0 -2.3 +0.2 -0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -2.0 -0.1 +0.0 -0.2
mgl MGL -0.3 -2.0 -0.0 -0.1 +0.1
nf_with_fulln NF_with_fullN +0.0 -2.1 +0.1 -0.0 -0.1
carbon source Sucrose (C) -0.4 -1.8 +0.1 -0.1 +0.1
nf_with_fulln NF_with_fullN -0.0 -2.0 +0.1 -0.1 -0.1
carbon source D-Glucose (C) -0.3 -1.8 -0.1 -0.1 +0.2
mgl MGL +0.0 -2.2 +0.1 -0.0 +0.1
mgl MGL +0.3 -2.1 -0.1 -0.1 -0.2
carbon source D-Xylose (C) +0.1 -2.1 +0.0 -0.1 +0.1
carbon source Sucrose (C) +0.1 -2.1 +0.1 +0.0 -0.1
nf_with10percent_fulln NF_with10percent_fullN -0.3 -1.5 +0.1 -0.0 -0.2
mgl MGL +0.1 -2.0 +0.1 -0.0 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 -2.2 +0.1 -0.0 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.5 -2.1 -0.1 -0.0 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.4 -1.8 -0.1 -0.1 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 -1.7 +0.0 -0.1 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 -1.8 +0.1 -0.1 +0.0
carbon source D-Xylose (C) +0.0 -1.7 +0.1 -0.1 +0.2
carbon source D-Mannitol (C) +0.4 -1.8 -0.0 -0.0 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 -1.7 +0.1 +0.0 -0.0
nitrogen source L-Serine (N); ShewMM media; no shaking +0.6 -2.0 +0.1 -0.0 +0.0
carbon source NLDM_metabolites (C) +0.7 -1.9 -0.1 +0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.5 -1.4 +0.1 -0.1 -0.0
carbon source D-Mannitol (C) +0.4 -1.6 +0.2 -0.0 +0.3
carbon source casaminos (C) +0.4 -1.4 +0.2 +0.1 +0.1
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EX31_RS03395
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EX31_RS03400
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EX31_RS03420
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