Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03365 and EX31_RS03370 are separated by 210 nucleotidesEX31_RS03370 and EX31_RS03375 are separated by 214 nucleotidesEX31_RS03375 and EX31_RS03380 are separated by 28 nucleotidesEX31_RS03380 and EX31_RS03385 are separated by 430 nucleotides EX31_RS03365: EX31_RS03365 - multicopper oxidase CueO, at 160,334 to 161,938 _RS03365 EX31_RS03370: EX31_RS03370 - YacC family pilotin-like protein, at 162,149 to 162,496 _RS03370 EX31_RS03375: EX31_RS03375 - polyamine aminopropyltransferase, at 162,711 to 163,586 _RS03375 EX31_RS03380: EX31_RS03380 - adenosylmethionine decarboxylase, at 163,615 to 164,409 _RS03380 EX31_RS03385: EX31_RS03385 - hypothetical protein, at 164,840 to 165,715 _RS03385
Group Condition EX31_RS03365 EX31_RS03370 EX31_RS03375 EX31_RS03380 EX31_RS03385
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 -0.3 -0.3 -0.1 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -0.2 -0.6 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -0.2 -0.6 -0.0 +0.0
carbon source D-Glucose (C) -0.3 -0.3 +0.2 -0.4 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 -0.3 -0.4 -0.2 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -0.2 -0.1 -0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.0 +0.1 -0.5 -0.1 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.0 -0.2 -0.2 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.1 -0.3 -0.3 -0.1 -0.0
carbon source D-Mannitol (C) -0.1 -0.2 +0.0 -0.2 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.1 -0.3 -0.2 -0.0
carbon source Sucrose (C) -0.0 -0.2 -0.2 -0.2 +0.1
carbon source D-Xylose (C) -0.2 -0.2 -0.1 +0.0 +0.1
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 -0.1 -0.2 -0.2 +0.0
carbon source NLDM_metabolites (C) -0.2 -0.5 +0.3 +0.0 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.0 -0.3 -0.1 +0.2
carbon source D-Mannitol (C) -0.0 -0.4 +0.1 -0.1 +0.1
carbon source Sucrose (C) -0.0 -0.3 +0.1 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 -0.3 -0.1 -0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.2 +0.1 -0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.1 -0.1 -0.2 -0.2 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 +0.1 -0.3 -0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 +0.1 -0.3 -0.2 +0.1
carbon source NLDM_metabolites (C) -0.1 -0.3 +0.3 -0.0 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 +0.2 -0.1 +0.0 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 -0.3 +0.1 +0.1 +0.1
carbon source D,L-Lactate (C) +0.0 -0.2 +0.3 +0.1 +0.1
nl-ccm_agar NL-CCM_agar -0.0 -0.2 +0.2 +0.2 +0.2
carbon source casaminos (C) +0.0 -0.1 +0.3 +0.1 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 +0.2 +0.1 +0.2 +0.1
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