Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03140 and EX31_RS03145 are separated by 137 nucleotidesEX31_RS03145 and EX31_RS03150 are separated by 61 nucleotidesEX31_RS03150 and EX31_RS03155 are separated by 28 nucleotidesEX31_RS03155 and EX31_RS03160 overlap by 1 nucleotides EX31_RS03140: EX31_RS03140 - DNA oxidative demethylase AlkB, at 111,633 to 112,286 _RS03140 EX31_RS03145: EX31_RS03145 - shikimate 5-dehydrogenase, at 112,424 to 113,242 _RS03145 EX31_RS03150: EX31_RS03150 - glucarate dehydratase, at 113,304 to 114,641 _RS03150 EX31_RS03155: EX31_RS03155 - glucarate dehydratase, at 114,670 to 116,010 _RS03155 EX31_RS03160: EX31_RS03160 - MFS transporter, at 116,010 to 117,383 _RS03160
Group Condition EX31_RS03140 EX31_RS03145 EX31_RS03150 EX31_RS03155 EX31_RS03160
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.7 -0.1 +0.1 -0.0 -0.2
nf_with_fulln NF_with_fullN -0.6 +0.1 -0.2 +0.1 -0.0
nf_with_fulln NF_with_fullN -0.6 +0.2 -0.3 -0.0 +0.1
carbon source NLDM_metabolites (C) -0.3 -0.7 +0.0 +0.2 +0.1
carbon source D-Mannitol (C) -0.9 +0.1 +0.2 -0.1 +0.2
nf_with10percent_fulln NF_with10percent_fullN -0.5 +0.1 -0.2 +0.0 -0.0
nf_with_fulln NF_with_fullN -0.4 +0.2 -0.3 -0.0 +0.1
nf_with10percent_fulln NF_with10percent_fullN -0.3 +0.2 -0.2 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 -0.3 -0.2 -0.2 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 -0.1 -0.3 -0.2 -0.0
carbon source D-Xylose (C) -0.7 +0.2 +0.3 -0.0 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 +0.2 +0.1 -0.2 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.4 +0.2 -0.1 +0.2 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.3 -0.1 +0.3 +0.1 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 -0.1 +0.3 +0.2 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.2 +0.2 -0.2 +0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 -0.2 -0.1 +0.3 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.5 -0.2 -0.3 +0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 -0.2 +0.2 +0.3 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.6 -0.3 -0.1 +0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.4 -0.0 +0.4 -0.1 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.4 -0.1 +0.4 -0.0 -0.0
carbon source D,L-Lactate (C) +0.2 -0.1 +0.3 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.1 +0.3 +0.3 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.6 +0.1 +0.1 +0.1 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.1 +0.3 +0.4 +0.1
carbon source D-Glucose (C) +0.3 +0.1 +0.2 +0.1 +0.1
carbon source casaminos (C) +0.4 +0.1 +0.3 -0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.7 +0.2 +0.1 +0.2 -0.1
carbon source NLDM_metabolites (C) +0.3 +0.3 +0.2 +0.2 +0.2
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