Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS03115 and EX31_RS03120 are separated by 19 nucleotidesEX31_RS03120 and EX31_RS03125 are separated by 18 nucleotidesEX31_RS03125 and EX31_RS03130 overlap by 4 nucleotidesEX31_RS03130 and EX31_RS03135 are separated by 56 nucleotides EX31_RS03115: EX31_RS03115 - spore coat protein U domain-containing protein, at 106,195 to 106,740 _RS03115 EX31_RS03120: EX31_RS03120 - molecular chaperone, at 106,760 to 107,557 _RS03120 EX31_RS03125: EX31_RS03125 - fimbrial biogenesis outer membrane usher protein, at 107,576 to 110,023 _RS03125 EX31_RS03130: EX31_RS03130 - spore coat U domain-containing protein, at 110,020 to 110,988 _RS03130 EX31_RS03135: EX31_RS03135 - cold shock domain-containing protein, at 111,045 to 111,524 _RS03135
Group Condition EX31_RS03115 EX31_RS03120 EX31_RS03125 EX31_RS03130 EX31_RS03135
nf_with_fulln NF_with_fullN -0.2 -0.2 -0.1 -0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 -0.1 -0.2 -0.1
carbon source NLDM_metabolites (C) -0.0 -0.2 +0.2 -0.3 -0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.1 +0.1 -0.1 +0.1
carbon source D,L-Lactate (C) -0.3 +0.1 +0.0 -0.1 +0.1
carbon source Sucrose (C) -0.1 -0.1 +0.3 -0.0 -0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.1 -0.0 +0.2 +0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 +0.0 +0.0 +0.2 -0.1
nl-ccm NL-CCM +0.1 +0.0 +0.1 +0.2 -0.1
carbon source D-Glucose (C) +0.1 +0.2 +0.1 -0.2 +0.2
carbon source NLDM_metabolites (C) +0.1 -0.0 +0.1 -0.1 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.1 +0.0 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 +0.1 -0.0 -0.2 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 +0.2 +0.0 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.0 +0.1 +0.2 +0.2 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 +0.2 +0.2 +0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.0 +0.1 +0.3 +0.2 -0.1
nl-ccm NL-CCM +0.2 +0.0 +0.1 +0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.0 -0.0 -0.0 +0.3
nl-ccm NL-CCM +0.3 +0.2 +0.1 +0.1 -0.2
carbon source D-Xylose (C) +0.2 +0.1 +0.1 -0.1 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.2 +0.2 +0.2 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.1 +0.2 +0.1 +0.1 +0.1
nl-ccm NL-CCM +0.2 +0.2 +0.1 +0.2 -0.1
nl-ccm NL-CCM +0.3 +0.2 +0.1 +0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 +0.2 +0.2 -0.0 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.0 +0.2 +0.2 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.2 +0.3 +0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.2 +0.4 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.5 +0.3 +0.4 +0.3 +0.1
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EX31_RS03115
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EX31_RS03120
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EX31_RS03130
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EX31_RS03135
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