Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS02595 and EX31_RS02600 are separated by 93 nucleotidesEX31_RS02600 and EX31_RS02605 are separated by 140 nucleotidesEX31_RS02605 and EX31_RS02610 are separated by 397 nucleotidesEX31_RS02610 and EX31_RS02615 are separated by 195 nucleotides EX31_RS02595: EX31_RS02595 - dihydrodipicolinate synthase family protein, at 550,634 to 551,518 _RS02595 EX31_RS02600: EX31_RS02600 - ABC transporter substrate-binding protein, at 551,612 to 553,171 _RS02600 EX31_RS02605: EX31_RS02605 - LysR family transcriptional regulator, at 553,312 to 554,199 _RS02605 EX31_RS02610: EX31_RS02610 - membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family, at 554,597 to 557,074 _RS02610 EX31_RS02615: EX31_RS02615 - lipase family protein, at 557,270 to 559,369 _RS02615
Group Condition EX31_RS02595 EX31_RS02600 EX31_RS02605 EX31_RS02610 EX31_RS02615
carbon source NLDM_metabolites (C) -0.3 -0.9 -0.2 -0.2 -0.4
nl-ccm_agar NL-CCM_agar -0.4 +0.0 -0.2 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.4 +0.1 -0.3 -0.2 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 +0.1 -0.3 -0.1 -0.0
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.1 -0.4 -0.1 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 +0.3 -0.3 -0.2 -0.1
carbon source casaminos (C) -0.2 -0.2 -0.3 -0.0 +0.1
mgl MGL -0.2 +0.1 -0.1 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.3 -0.1 -0.0 -0.1
carbon source Sucrose (C) -0.3 +0.0 +0.1 +0.0 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 +0.1 -0.2 -0.3 +0.1
nl-ccm NL-CCM -0.3 +0.2 +0.1 -0.3 -0.1
mgl MGL -0.2 +0.2 -0.2 -0.1 -0.0
nln NLN -0.2 +0.2 -0.3 +0.0 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 +0.3 -0.1 -0.1 -0.0
carbon source NLDM_metabolites (C) +0.1 -0.2 +0.1 -0.3 +0.1
nl-ccm NL-CCM -0.3 +0.3 -0.1 -0.0 -0.1
nln NLN +0.1 +0.2 -0.3 -0.0 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.4 -0.0 -0.3 -0.0
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.2 -0.1 +0.1 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.3 +0.1 +0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.2 -0.0 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 +0.1 +0.2 +0.2 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.1 +0.2 +0.0 +0.2
nf_with_fulln NF_with_fullN +0.1 +0.4 +0.0 +0.0 -0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.1 +0.4 -0.1 +0.2 +0.0
nf_with10percent_fulln NF_with10percent_fullN +0.2 +0.4 -0.1 +0.1 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.5 -0.1 +0.0 +0.3 +0.2
nf_with_fulln NF_with_fullN +0.3 +0.4 +0.2 +0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.3 +0.4 +0.2 +0.1 +0.1
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EX31_RS02595
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EX31_RS02600
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EX31_RS02615
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