Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS02540 and EX31_RS02545 are separated by 3 nucleotidesEX31_RS02545 and EX31_RS02550 overlap by 11 nucleotidesEX31_RS02550 and EX31_RS02555 overlap by 4 nucleotidesEX31_RS02555 and EX31_RS02560 overlap by 8 nucleotides EX31_RS02540: EX31_RS02540 - helix-turn-helix transcriptional regulator, at 540,077 to 540,622 _RS02540 EX31_RS02545: EX31_RS02545 - alpha/beta hydrolase, at 540,626 to 541,681 _RS02545 EX31_RS02550: EX31_RS02550 - MATE family efflux transporter, at 541,671 to 543,023 _RS02550 EX31_RS02555: EX31_RS02555 - hypothetical protein, at 543,020 to 543,661 _RS02555 EX31_RS02560: EX31_RS02560 - hypothetical protein, at 543,654 to 543,914 _RS02560
Group Condition EX31_RS02540 EX31_RS02545 EX31_RS02550 EX31_RS02555 EX31_RS02560
nln NLN -1.2 -0.3 +0.3 -0.3 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.6 -0.1 -0.2 -0.6 +0.5
carbon source NLDM_metabolites (C) +0.7 -0.2 -0.8 +0.2 -0.5
nf_with_fulln NF_with_fullN -0.6 -0.5 +0.1 -0.1 +0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.5 -0.4 -0.3 -0.1 +0.9
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.8 -0.3 +0.1 -0.8 -0.0
mgl MGL +0.9 +0.2 +0.1 +0.0 -1.2
nf_with10percent_fulln NF_with10percent_fullN -0.7 -0.3 +0.4 +0.3 +0.4
carbon source D,L-Lactate (C) -0.8 -0.4 +0.2 +0.4 +0.7
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 -0.2 -0.6 -0.0 +0.9
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.1 -0.5 -0.2 +1.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 -0.2 -0.1 -0.5 +0.9
carbon source Sucrose (C) -0.4 -0.4 -0.3 +0.0 +1.5
nitrogen source L-Serine (N); RCH2 media; no shaking +0.7 -0.5 +0.0 -0.5 +0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.5 +0.2 -0.2 -0.3 +1.2
nf_with_fulln NF_with_fullN -0.4 -0.4 +0.3 -0.1 +1.0
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.5 -0.3 +0.3 -0.4 +0.6
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.2 -0.2 -0.2 +1.6
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 +0.2 +0.0 -0.7 +1.0
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.5 +0.0 +0.0 -0.8 +1.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.4 -0.1 -0.3 -0.2 +1.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.1 -0.3 -0.6 +1.8
nitrogen source L-Serine (N); ShewMM media; no shaking +0.6 -0.0 +0.2 -0.3 +0.8
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.5 -0.1 +0.0 -0.1 +1.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.9 +0.1 +0.5 -0.5 +0.5
nitrogen source L-Serine (N); ShewMM media; no shaking +1.0 +0.3 -0.1 -0.4 +1.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.7 +0.4 +0.1 -0.3 +1.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.8 +0.4 +0.0 -0.2 +1.5
carbon source casaminos (C) +3.1 +0.2 +0.8 +0.1 -0.8
carbon source casaminos (C) +3.8 -0.2 +1.2 +0.7 -0.1
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EX31_RS02540
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EX31_RS02545
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EX31_RS02555
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EX31_RS02560
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