Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS02420 and EX31_RS02425 are separated by 9 nucleotidesEX31_RS02425 and EX31_RS02430 are separated by 2 nucleotidesEX31_RS02430 and EX31_RS02435 overlap by 4 nucleotidesEX31_RS02435 and EX31_RS02440 are separated by 10 nucleotides EX31_RS02420: EX31_RS02420 - type III PLP-dependent enzyme, at 513,708 to 515,015 _RS02420 EX31_RS02425: EX31_RS02425 - hypothetical protein, at 515,025 to 515,936 _RS02425 EX31_RS02430: EX31_RS02430 - 3-oxoacyl-ACP synthase, at 515,939 to 516,961 _RS02430 EX31_RS02435: EX31_RS02435 - acyl--CoA ligase, at 516,958 to 518,538 _RS02435 EX31_RS02440: EX31_RS02440 - hypothetical protein, at 518,549 to 518,803 _RS02440
Group Condition EX31_RS02420 EX31_RS02425 EX31_RS02430 EX31_RS02435 EX31_RS02440
carbon source NLDM_metabolites (C) -0.3 -1.0 -0.5 -0.2 -0.1
nln NLN -0.4 -0.2 -0.3 -0.1 -0.3
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.1 -0.3 -0.1 -0.4
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -0.1 -0.2 -0.1 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.5 -0.1 -0.2 +0.1 -0.4
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.2 -0.3 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.2 -0.2 -0.3 -0.3
carbon source D,L-Lactate (C) -0.5 -0.6 +0.1 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.3 -0.4 +0.0 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.2 +0.2 -0.4 -0.1 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.1 -0.6 +0.0 +0.2
mgl MGL +0.0 +0.3 -0.4 -0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.1 -0.5 -0.1 +0.4 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.3 -0.6 +0.1 -0.2
carbon source casaminos (C) +0.0 -0.1 -0.5 -0.1 +0.5
mgl MGL +0.1 +0.4 -0.3 -0.1 -0.2
carbon source D-Xylose (C) -0.3 +0.3 -0.3 +0.1 +0.2
mgl MGL +0.2 +0.6 -0.4 +0.0 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 +0.4 -0.2 -0.0 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.5 +0.3 -0.2 -0.1 -0.0
carbon source NLDM_metabolites (C) +0.1 +0.4 -0.4 +0.1 +0.4
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.6 +0.3 -0.1 -0.2 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.6 +0.8 -0.4 -0.2 -0.1
mgl MGL +0.5 +0.5 -0.0 -0.1 -0.1
mgl MGL +0.3 +0.4 +0.2 -0.1 +0.0
mgl MGL +0.5 +0.9 -0.2 -0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.5 +0.5 +0.1 +0.3 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.6 +0.7 -0.1 +0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.7 +0.5 -0.2 +0.0 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.8 +0.8 -0.1 +0.1 +0.2
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EX31_RS02420
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EX31_RS02425
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EX31_RS02435
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EX31_RS02440
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