Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS02395 and EX31_RS02400 are separated by 71 nucleotidesEX31_RS02400 and EX31_RS02405 are separated by 195 nucleotidesEX31_RS02405 and EX31_RS02410 are separated by 319 nucleotidesEX31_RS02410 and EX31_RS02415 are separated by 285 nucleotides EX31_RS02395: EX31_RS02395 - hypothetical protein, at 509,834 to 510,193 _RS02395 EX31_RS02400: EX31_RS02400 - MetQ/NlpA family lipoprotein, at 510,265 to 511,077 _RS02400 EX31_RS02405: EX31_RS02405 - MFS transporter, at 511,273 to 512,484 _RS02405 EX31_RS02410: EX31_RS02410 - multidrug DMT transporter, at 512,804 to 513,139 _RS02410 EX31_RS02415: EX31_RS02415 - hypothetical protein, at 513,425 to 513,727 _RS02415
Group Condition EX31_RS02395 EX31_RS02400 EX31_RS02405 EX31_RS02410 EX31_RS02415
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.4 -0.2 -1.0 N.D.
carbon source NLDM_metabolites (C) -0.3 -0.4 -0.3 -0.5 N.D.
carbon source D-Xylose (C) -0.3 -0.4 -0.3 -0.4 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 +0.0 -0.2 -1.1 N.D.
carbon source casaminos (C) -0.2 +0.2 -0.2 -1.3 N.D.
carbon source Sucrose (C) -0.2 -0.2 +0.0 -0.9 N.D.
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.4 +0.2 -0.0 -0.8 N.D.
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 +0.3 -0.3 -1.0 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.2 -0.4 -0.6 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.0 -0.1 +0.1 -0.9 N.D.
carbon source D,L-Lactate (C) +0.2 -0.0 -0.1 -0.9 N.D.
carbon source NLDM_metabolites (C) -0.2 +0.1 +0.1 -0.9 N.D.
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 +0.3 -0.1 -0.5 N.D.
nln NLN +0.1 -0.4 -0.1 +0.5 N.D.
nitrogen source L-Serine (N); ShewMM media; no shaking -0.3 -0.4 +0.0 +0.7 N.D.
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.1 -0.1 -0.3 +0.7 N.D.
carbon source casaminos (C) -0.1 -0.4 +0.1 +0.6 N.D.
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 -0.3 +0.3 +0.5 N.D.
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.3 -0.1 +0.7 N.D.
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.2 +0.1 +0.8 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 -0.3 +0.1 +0.6 N.D.
nf_with_fulln NF_with_fullN +0.3 -0.1 -0.1 +0.7 N.D.
nf_with_fulln NF_with_fullN +0.3 -0.2 +0.0 +0.7 N.D.
nln NLN +0.2 +0.0 -0.1 +0.8 N.D.
nf_with10percent_fulln NF_with10percent_fullN +0.2 -0.1 -0.0 +0.8 N.D.
nf_with_fulln NF_with_fullN +0.2 -0.1 +0.0 +0.8 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.2 +0.2 +0.1 +0.6 N.D.
nf_with_fulln NF_with_fullN +0.3 +0.1 +0.0 +0.6 N.D.
carbon source Sucrose (C) +0.1 +0.3 +0.1 +0.8 N.D.
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.0 -0.1 +0.2 +1.2 N.D.
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EX31_RS02395
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EX31_RS02400
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EX31_RS02415
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