Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS02135 and EX31_RS02140 are separated by 264 nucleotidesEX31_RS02140 and EX31_RS02145 are separated by 31 nucleotidesEX31_RS02145 and EX31_RS02150 are separated by 197 nucleotidesEX31_RS02150 and EX31_RS02155 are separated by 69 nucleotides EX31_RS02135: EX31_RS02135 - antibiotic biosynthesis monooxygenase, at 466,436 to 466,771 _RS02135 EX31_RS02140: EX31_RS02140 - DUF1852 domain-containing protein, at 467,036 to 468,019 _RS02140 EX31_RS02145: EX31_RS02145 - methionine synthase, at 468,051 to 469,082 _RS02145 EX31_RS02150: EX31_RS02150 - YceI family protein, at 469,280 to 469,840 _RS02150 EX31_RS02155: EX31_RS02155 - HD domain-containing protein, at 469,910 to 471,040 _RS02155
Group Condition EX31_RS02135 EX31_RS02140 EX31_RS02145 EX31_RS02150 EX31_RS02155
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 -1.2 -0.5 +0.1 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.0 -1.1 -0.1 -0.3 -0.4
carbon source D-Glucose (C) +0.3 -0.0 -1.8 -0.0 -0.2
carbon source D,L-Lactate (C) -0.4 +0.0 -0.6 -0.4 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.3 -1.2 -0.2 -0.1 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.3 +0.1 -1.0 -0.6 -0.1
nf_with_fulln NF_with_fullN +0.3 -0.7 -0.9 -0.1 -0.1
mgl MGL -0.5 +0.1 -0.6 -0.4 +0.0
carbon source casaminos (C) -0.8 -0.6 +0.2 +0.1 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.1 -0.1 -0.8 -0.3 -0.3
carbon source D-Xylose (C) -0.5 +0.0 -0.6 +0.2 -0.3
carbon source D,L-Lactate (C) +0.3 -0.5 -0.2 -0.3 -0.4
nl-ccm_agar NL-CCM_agar -0.2 -0.2 +0.2 -0.3 -0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.0 -1.0 -0.3 -0.0 +0.2
nf_with_fulln NF_with_fullN +0.3 -0.4 -0.9 -0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.3 +0.4 +0.0 -0.9
mgl MGL -1.0 +0.2 +0.3 -0.0 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.3 -0.7 -0.3 -0.1 +0.3
nf_with_fulln NF_with_fullN +0.7 -0.6 -0.5 -0.2 +0.0
nitrogen source L-Serine (N); RCH2 media; shaking -0.0 -0.4 +0.5 -0.3 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.4 -0.9 -0.2 +0.3 +0.1
carbon source D-Mannitol (C) +0.9 -0.3 -0.9 +0.0 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.7 -0.2 -0.0 -0.0 +0.6
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.5 -0.8 -0.0 +0.3 -0.2
nl-ccm NL-CCM +0.4 -0.3 +0.2 -0.3 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 +0.2 +0.6 -0.2 -0.3
nl-ccm; high oxygen NL-CCM; high oxygen +0.5 -0.1 +0.3 -0.0 -0.7
carbon source NLDM_metabolites (C) +0.9 -0.1 -0.9 +0.1 +0.1
nl-ccm; low oxygen NL-CCM; low oxygen +0.6 +0.2 +0.5 -0.3 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 -0.4 +1.1 -0.2 -0.1
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