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Protein
Homologs
Fitness for 5 genes in
Rahnella sp. WP5
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
EX31_RS02135 and EX31_RS02140 are separated by 264 nucleotides
EX31_RS02140 and EX31_RS02145 are separated by 31 nucleotides
EX31_RS02145 and EX31_RS02150 are separated by 197 nucleotides
EX31_RS02150 and EX31_RS02155 are separated by 69 nucleotides
EX31_RS02135: EX31_RS02135 - antibiotic biosynthesis monooxygenase, at 466,436 to 466,771
_RS02135
EX31_RS02140: EX31_RS02140 - DUF1852 domain-containing protein, at 467,036 to 468,019
_RS02140
EX31_RS02145: EX31_RS02145 - methionine synthase, at 468,051 to 469,082
_RS02145
EX31_RS02150: EX31_RS02150 - YceI family protein, at 469,280 to 469,840
_RS02150
EX31_RS02155: EX31_RS02155 - HD domain-containing protein, at 469,910 to 471,040
_RS02155
Group
Condition
EX31
_RS02135
EX31
_RS02140
EX31
_RS02145
EX31
_RS02150
EX31
_RS02155
nitrogen source
L-Glutamine (N); ShewMM media; no shaking
-0.4
-1.2
-0.5
+0.1
-0.1
nitrogen source
Ammonium chloride (N); ShewMM media; shaking
+0.0
-1.1
-0.1
-0.3
-0.4
carbon source
D-Glucose (C)
+0.3
-0.0
-1.8
-0.0
-0.2
carbon source
D,L-Lactate (C)
-0.4
+0.0
-0.6
-0.4
-0.2
nitrogen source
L-Glutamine (N); ShewMM media; shaking
-0.3
-1.2
-0.2
-0.1
+0.2
nf_with10percent_fulln
NF_with10percent_fullN
+0.3
+0.1
-1.0
-0.6
-0.1
nf_with_fulln
NF_with_fullN
+0.3
-0.7
-0.9
-0.1
-0.1
mgl
MGL
-0.5
+0.1
-0.6
-0.4
+0.0
carbon source
casaminos (C)
-0.8
-0.6
+0.2
+0.1
-0.2
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.1
-0.1
-0.8
-0.3
-0.3
carbon source
D-Xylose (C)
-0.5
+0.0
-0.6
+0.2
-0.3
carbon source
D,L-Lactate (C)
+0.3
-0.5
-0.2
-0.3
-0.4
nl-ccm_agar
NL-CCM_agar
-0.2
-0.2
+0.2
-0.3
-0.5
nitrogen source
L-Glutamine (N); ShewMM media; shaking
+0.0
-1.0
-0.3
-0.0
+0.2
nf_with_fulln
NF_with_fullN
+0.3
-0.4
-0.9
-0.1
+0.1
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.1
-0.3
+0.4
+0.0
-0.9
mgl
MGL
-1.0
+0.2
+0.3
-0.0
+0.0
nitrogen source
Ammonium chloride (N); RCH2 media; no shaking
+0.3
-0.7
-0.3
-0.1
+0.3
nf_with_fulln
NF_with_fullN
+0.7
-0.6
-0.5
-0.2
+0.0
nitrogen source
L-Serine (N); RCH2 media; shaking
-0.0
-0.4
+0.5
-0.3
-0.3
nitrogen source
Ammonium chloride (N); RCH2 media; shaking
+0.4
-0.9
-0.2
+0.3
+0.1
carbon source
D-Mannitol (C)
+0.9
-0.3
-0.9
+0.0
-0.2
nitrogen source
L-Serine (N); RCH2 media; shaking
-0.7
-0.2
-0.0
-0.0
+0.6
nitrogen source
L-Glutamine (N); RCH2 media; shaking
+0.5
-0.8
-0.0
+0.3
-0.2
nl-ccm
NL-CCM
+0.4
-0.3
+0.2
-0.3
-0.3
mixed community
NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum
-0.3
+0.2
+0.6
-0.2
-0.3
nl-ccm; high oxygen
NL-CCM; high oxygen
+0.5
-0.1
+0.3
-0.0
-0.7
carbon source
NLDM_metabolites (C)
+0.9
-0.1
-0.9
+0.1
+0.1
nl-ccm; low oxygen
NL-CCM; low oxygen
+0.6
+0.2
+0.5
-0.3
-0.1
nitrogen source
L-Serine (N); RCH2 media; no shaking
+0.4
-0.4
+1.1
-0.2
-0.1
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