Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS02110 and EX31_RS02115 are separated by 112 nucleotidesEX31_RS02115 and EX31_RS02120 are separated by 195 nucleotidesEX31_RS02120 and EX31_RS02125 are separated by 47 nucleotidesEX31_RS02125 and EX31_RS02130 overlap by 4 nucleotides EX31_RS02110: EX31_RS02110 - L-rhamnose mutarotase, at 462,200 to 462,544 _RS02110 EX31_RS02115: EX31_RS02115 - L-fucose:H+ symporter permease, at 462,657 to 463,895 _RS02115 EX31_RS02120: EX31_RS02120 - MFS transporter, at 464,091 to 465,296 _RS02120 EX31_RS02125: EX31_RS02125 - helix-turn-helix transcriptional regulator, at 465,344 to 466,054 _RS02125 EX31_RS02130: EX31_RS02130 - amino acid-binding protein, at 466,051 to 466,443 _RS02130
Group Condition EX31_RS02110 EX31_RS02115 EX31_RS02120 EX31_RS02125 EX31_RS02130
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.7 -0.1 -0.3 -0.2 -0.4
carbon source casaminos (C) -0.1 +0.3 -0.2 -0.3 -1.4
carbon source NLDM_metabolites (C) +0.2 -0.4 -0.3 -1.7 +0.6
nl-ccm_agar NL-CCM_agar -0.5 -0.1 -0.1 -0.2 -0.7
nl-ccm_agar NL-CCM_agar -0.6 +0.3 -0.2 -0.3 -0.5
mgl MGL -0.3 +0.1 +0.0 -0.2 -0.9
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.3 -0.2 -0.5 -0.5
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.5 +0.1 -0.1 -0.3 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 -0.1 -0.2 -0.2 -1.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.3 +0.2 +0.1 -0.4 -0.8
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.4 -0.4 +0.1 -0.3 -1.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.8 -0.2 +0.1 -0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.5 +0.2 -0.1 -0.2 -0.5
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.2 -0.0 +0.2 -0.1 -1.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 -0.1 +0.3 -0.2 -0.6
nitrogen source L-Serine (N); RCH2 media; shaking +0.4 -0.1 -0.1 -0.8 -0.3
nl-ccm NL-CCM -0.5 -0.1 -0.2 +0.3 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.4 +0.2 -0.1 -0.6 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.5 -0.0 +0.1 -0.2 -0.8
nitrogen source L-Serine (N); ShewMM media; shaking +0.5 -0.0 +0.2 -0.2 -0.6
carbon source Sucrose (C) +0.3 -0.1 -0.1 -0.6 +0.5
carbon source D,L-Lactate (C) -0.2 -0.3 +0.3 -0.2 +0.5
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.7 -0.1 +0.2 -0.4 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.7 +0.0 -0.0 +0.3 -0.3
carbon source D,L-Lactate (C) +1.7 +0.2 -0.2 +0.5 -1.4
nf_with10percent_fulln NF_with10percent_fullN +0.4 +0.2 +0.4 +0.3 -0.2
carbon source casaminos (C) +0.6 -0.1 +0.1 +0.0 +0.6
carbon source D-Mannitol (C) +1.4 -0.0 +0.1 -0.5 +0.2
carbon source Sucrose (C) +1.6 +0.3 -0.0 -0.5 +0.1
carbon source D-Mannitol (C) +0.9 +0.2 -0.4 +0.1 +0.8
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