Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS01850 and EX31_RS01855 are separated by 31 nucleotidesEX31_RS01855 and EX31_RS01860 are separated by 11 nucleotidesEX31_RS01860 and EX31_RS01865 overlap by 4 nucleotidesEX31_RS01865 and EX31_RS01870 are separated by 3 nucleotides EX31_RS01850: EX31_RS01850 - type VI secretion system contractile sheath small subunit, at 400,107 to 400,601 _RS01850 EX31_RS01855: EX31_RS01855 - type VI secretion system contractile sheath large subunit, at 400,633 to 402,180 _RS01855 EX31_RS01860: EX31_RS01860 - type VI secretion system baseplate subunit TssK, at 402,192 to 403,529 _RS01860 EX31_RS01865: EX31_RS01865 - DotU family type IV/VI secretion system protein, at 403,526 to 404,179 _RS01865 EX31_RS01870: EX31_RS01870 - OmpA family protein, at 404,183 to 405,877 _RS01870
Group Condition EX31_RS01850 EX31_RS01855 EX31_RS01860 EX31_RS01865 EX31_RS01870
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -2.0 +0.0 -0.1 -0.9 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -1.1 +0.2 -0.3 -0.4 -0.4
carbon source Sucrose (C) -2.0 +0.1 +0.4 +0.1 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.7 -0.0 +0.1 -0.7 -0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking -0.8 +0.2 -0.1 -0.5 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking -0.5 -0.1 -0.4 -0.2 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.6 +0.0 -0.4 -0.4 +0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.7 +0.0 -0.4 -0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.7 -0.0 -0.0 -0.5 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 +0.2 +0.1 -0.7 -0.1
carbon source NLDM_metabolites (C) -1.0 +0.6 +0.0 -0.5 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.2 -0.5 -0.5 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.6 +0.3 -0.2 -0.2 -0.3
carbon source Sucrose (C) -0.4 +0.3 -0.1 -0.4 -0.5
nf_with10percent_fulln NF_with10percent_fullN -1.0 -0.1 +0.3 +0.1 -0.1
carbon source D-Mannitol (C) -0.9 -0.1 +0.4 +0.2 -0.3
carbon source casaminos (C) -0.8 +0.2 +0.2 -0.2 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.4 +0.2 -0.5 -0.2 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.2 +0.3 -0.6 +0.2
carbon source D-Xylose (C) -0.5 +0.3 +0.2 +0.3 -0.2
nl-ccm NL-CCM -0.7 +0.1 +0.5 +0.3 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.6 +0.1 +0.1 -0.4 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.9 -0.1 -0.2 -0.2 +0.1
carbon source casaminos (C) -0.3 +0.3 +0.2 +0.4 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.4 -0.1 +0.2 +0.5 -0.1
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.7 +0.2 +0.2 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 +0.1 +0.3 +0.4 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.6 +0.3 +0.1 +0.1 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.7 +0.3 +0.2 +0.2 +0.0
nl-ccm NL-CCM +0.4 +0.2 +0.2 +0.5 +0.1
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