Fitness for 5 genes in Rahnella sp. WP5

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 123 experiments or choose conditions or try the comparative fitness browser

500 ntEX31_RS01830 and EX31_RS01835 are separated by 146 nucleotidesEX31_RS01835 and EX31_RS01840 are separated by 405 nucleotidesEX31_RS01840 and EX31_RS01845 are separated by 72 nucleotidesEX31_RS01845 and EX31_RS01850 are separated by 845 nucleotides EX31_RS01830: EX31_RS01830 - 5-histidylcysteine sulfoxide synthase, at 392,276 to 394,417 _RS01830 EX31_RS01835: EX31_RS01835 - site-specific integrase, at 394,564 to 395,688 _RS01835 EX31_RS01840: EX31_RS01840 - PAS domain-containing protein, at 396,094 to 397,641 _RS01840 EX31_RS01845: EX31_RS01845 - HAMP domain-containing protein, at 397,714 to 399,261 _RS01845 EX31_RS01850: EX31_RS01850 - type VI secretion system contractile sheath small subunit, at 400,107 to 400,601 _RS01850
Group Condition EX31_RS01830 EX31_RS01835 EX31_RS01840 EX31_RS01845 EX31_RS01850
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 -0.0 -1.5 +0.0 -2.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.1 -0.2 -0.7 -0.3 -0.7
nf_with10percent_fulln NF_with10percent_fullN -0.1 +0.0 -0.2 -0.4 -1.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.1 -0.4 -0.0 -0.4 -0.7
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 -0.3 +0.1 -0.1 -1.1
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.3 -0.8 -0.2 -0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 -0.3 -0.4 -0.2 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 +0.1 -1.2 -0.3 +0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.1 -1.1 -0.1 -0.1
carbon source Sucrose (C) -0.1 +0.1 +0.6 +0.3 -2.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.0 +0.0 -0.5 +0.1 -0.7
carbon source Sucrose (C) +0.3 -0.0 -0.4 -0.2 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 +0.2 -0.2 -0.2 -0.6
carbon source D,L-Lactate (C) +0.3 +0.0 -1.0 -0.3 +0.4
carbon source D-Mannitol (C) +0.2 -0.0 +0.4 -0.3 -0.9
carbon source NLDM_metabolites (C) +0.1 +0.3 +0.2 -0.1 -1.0
nf_with_fulln NF_with_fullN +0.2 +0.3 -0.4 -0.2 -0.3
carbon source casaminos (C) +0.6 +0.0 +0.0 -0.1 -0.8
carbon source D,L-Lactate (C) +0.2 -0.3 -0.8 +0.4 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 -0.1 +0.4 +0.2 -0.8
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 -0.1 +0.2 -0.0 -0.5
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 +0.2 -0.3 -0.4 +0.5
carbon source D-Xylose (C) +0.4 +0.3 -0.2 +0.2 -0.5
nl-ccm; vial NL-CCM; vial +0.3 +0.3 -0.3 -0.2 +0.6
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.2 +0.2 -0.3 +0.1 +0.6
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 +0.2 -0.2 -0.0 +0.9
nln NLN +0.1 +0.1 +0.6 -0.3 +0.6
carbon source D-Xylose (C) +0.3 +0.2 +0.6 +0.1 -0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 +0.3 -0.0 +0.1 +0.7
nl-ccm; vial NL-CCM; vial +0.1 +0.3 +0.3 +0.4 +0.5
remove
EX31_RS01830
plot		 remove
EX31_RS01835
plot		 remove
EX31_RS01840		 remove
EX31_RS01845
plot		 remove
EX31_RS01850
plot