Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS01610 and EX31_RS01615 are separated by 8 nucleotidesEX31_RS01615 and EX31_RS01620 overlap by 8 nucleotidesEX31_RS01620 and EX31_RS01625 are separated by 85 nucleotidesEX31_RS01625 and EX31_RS01630 are separated by 49 nucleotides EX31_RS01610: EX31_RS01610 - phage tail protein, at 358,552 to 359,103 _RS01610 EX31_RS01615: EX31_RS01615 - DNA breaking-rejoining protein, at 359,112 to 359,387 _RS01615 EX31_RS01620: EX31_RS01620 - DUF2190 family protein, at 359,380 to 359,706 _RS01620 EX31_RS01625: EX31_RS01625 - Clp protease ClpP, at 359,792 to 361,750 _RS01625 EX31_RS01630: EX31_RS01630 - phage portal protein, at 361,800 to 363,278 _RS01630
Group Condition EX31_RS01610 EX31_RS01615 EX31_RS01620 EX31_RS01625 EX31_RS01630
carbon source Sucrose (C) -0.9 -0.6 -0.8 -0.2 +0.2
carbon source Sucrose (C) -0.2 -0.3 -1.4 -0.4 +0.0
carbon source D-Glucose (C) -0.8 -0.9 -0.1 -0.2 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.1 -1.5 +0.4 -0.2 -0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 -0.1 -1.1 +0.3 -0.2
nitrogen source L-Serine (N); RCH2 media; shaking -1.0 +0.4 -0.9 +0.1 +0.0
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.7 -1.1 +0.3 +0.3 +0.1
carbon source D-Mannitol (C) +0.4 -0.8 -0.8 +0.2 -0.0
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.4 -1.3 +0.3 +0.2 +0.2
nl-ccm; low oxygen NL-CCM; low oxygen +0.4 -1.1 -0.4 +0.2 +0.0
carbon source D-Xylose (C) +0.7 -0.2 -1.5 +0.3 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.5 -0.8 +0.7 -0.2 -0.0
carbon source casaminos (C) +0.8 -1.4 +0.1 -0.1 +0.0
nf_with_fulln NF_with_fullN -1.1 +0.2 +0.6 +0.1 -0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.8 -0.6 +0.9 +0.2 +0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +1.0 -1.5 -0.1 +0.3
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.9 +0.5 +0.3 -0.1 +0.3
nitrogen source L-Serine (N); RCH2 media; no shaking +0.5 -0.8 +0.5 +0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.2 +0.4 +0.9 -0.5 -0.1
nl-ccm NL-CCM +0.6 -0.6 +0.4 +0.3 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.6 +0.2 +0.7 +0.5 +0.2
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 +0.5 +1.0 -0.2 -0.0
nitrogen source L-Serine (N); ShewMM media; shaking +0.5 +0.5 +0.8 +0.2 -0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +1.2 +0.4 +0.2 +0.1 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.8 +0.5 +0.5 +0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.5 +0.6 +0.3 +0.4 +0.2
nl-ccm_agar NL-CCM_agar +1.0 +0.2 +0.2 +0.5 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.6 +0.6 +0.6 +0.3 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.9 +0.7 +0.3 +0.3 +0.1
nl-ccm_agar NL-CCM_agar +1.0 +0.5 +0.6 +0.4 +0.2
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