Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS01600 and EX31_RS01605 are separated by 7 nucleotidesEX31_RS01605 and EX31_RS01610 overlap by 4 nucleotidesEX31_RS01610 and EX31_RS01615 are separated by 8 nucleotidesEX31_RS01615 and EX31_RS01620 overlap by 8 nucleotides EX31_RS01600: EX31_RS01600 - tail fiber protein, at 357,406 to 358,143 _RS01600 EX31_RS01605: EX31_RS01605 - tail protein, at 358,151 to 358,555 _RS01605 EX31_RS01610: EX31_RS01610 - phage tail protein, at 358,552 to 359,103 _RS01610 EX31_RS01615: EX31_RS01615 - DNA breaking-rejoining protein, at 359,112 to 359,387 _RS01615 EX31_RS01620: EX31_RS01620 - DUF2190 family protein, at 359,380 to 359,706 _RS01620
Group Condition EX31_RS01600 EX31_RS01605 EX31_RS01610 EX31_RS01615 EX31_RS01620
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -1.4 -0.7 -1.1 +0.3
carbon source NLDM_metabolites (C) +0.3 -1.9 +0.4 -0.6 -0.3
carbon source D-Glucose (C) +0.5 -0.6 -0.8 -0.9 -0.1
carbon source Sucrose (C) +0.3 +0.1 -0.2 -0.3 -1.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.6 +0.5 -0.1 -1.5 +0.4
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.4 -0.3 -0.5 -0.8 +0.7
nf_with_fulln NF_with_fullN +0.6 -0.0 -1.0 -0.8 -0.0
carbon source D-Mannitol (C) +0.6 -0.4 +0.4 -0.8 -0.8
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.5 +0.0 -0.4 -1.3 +0.3
carbon source Sucrose (C) +0.8 +0.8 -0.9 -0.6 -0.8
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 +0.7 -1.0 +0.4 -0.9
nl-ccm; low oxygen NL-CCM; low oxygen +0.6 -0.0 +0.4 -1.1 -0.4
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.4 -0.3 -0.8 -0.6 +0.9
carbon source D-Xylose (C) +1.1 +0.1 +0.7 -0.2 -1.5
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.2 +0.3 +1.0 -1.5
carbon source casaminos (C) +0.6 +0.3 +0.8 -1.4 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.3 +0.6 -0.5 -0.1 +0.9
nf_with_fulln NF_with_fullN +0.6 +0.5 -1.1 +0.2 +0.6
nitrogen source L-Serine (N); ShewMM media; no shaking +0.6 +0.8 -0.8 +0.6 -0.2
nitrogen source L-Serine (N); ShewMM media; no shaking +0.3 +0.6 +0.4 +0.6 -0.7
nl-ccm; high oxygen NL-CCM; high oxygen +0.4 +0.4 +0.9 -0.5 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.4 +1.0 +0.0 +0.3 +0.7
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 -0.5 +0.3 +0.5 +1.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.4 -0.6 +0.9 +0.7 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.8 +0.9 -0.6 +0.2 +0.7
carbon source D-Xylose (C) +0.8 +1.0 +0.8 -0.2 -0.2
nl-ccm; vial NL-CCM; vial +0.5 +0.3 +0.7 +0.5 +0.4
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.6 +0.1 +1.2 +0.4 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 +0.5 +0.6 +0.6 +0.6
nl-ccm_agar NL-CCM_agar +0.2 +0.5 +1.0 +0.5 +0.6
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