Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS01465 and EX31_RS01470 are separated by 3 nucleotidesEX31_RS01470 and EX31_RS01475 are separated by 67 nucleotidesEX31_RS01475 and EX31_RS01480 are separated by 68 nucleotidesEX31_RS01480 and EX31_RS01485 are separated by 396 nucleotides EX31_RS01465: EX31_RS01465 - oligogalacturonate lyase, at 330,492 to 331,673 _RS01465 EX31_RS01470: EX31_RS01470 - cupin domain-containing protein, at 331,677 to 331,997 _RS01470 EX31_RS01475: EX31_RS01475 - RpiB/LacA/LacB family sugar-phosphate isomerase, at 332,065 to 332,703 _RS01475 EX31_RS01480: EX31_RS01480 - 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD, at 332,772 to 333,533 _RS01480 EX31_RS01485: EX31_RS01485 - helix-turn-helix domain-containing protein, at 333,930 to 334,286 _RS01485
Group Condition EX31_RS01465 EX31_RS01470 EX31_RS01475 EX31_RS01480 EX31_RS01485
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.0 -0.1 -0.4 -2.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.3 +0.1 -0.5 +0.4 -1.5
nitrogen source L-Serine (N); ShewMM media; no shaking -0.0 -0.2 -0.7 -0.5 -0.2
carbon source NLDM_metabolites (C) +0.3 -0.6 -1.0 -0.3 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.1 -0.3 -0.2 -0.1 -0.6
mgl MGL +0.0 -0.5 -0.4 -0.4 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.1 +0.3 +0.0 -0.8 -0.7
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 -0.3 -0.2 -0.6 +0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.1 +0.4 -0.2 -1.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.2 +0.1 +0.2 -0.8 -0.5
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.1 -0.2 +0.1 -0.9 +0.0
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 -0.1 +0.2 -0.6 -0.5
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 +0.2 +0.0 -0.8 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.2 +0.2 +0.1 +0.2 -0.7
nitrogen source L-Serine (N); ShewMM media; shaking +0.1 +0.3 +0.3 -0.3 -0.4
carbon source casaminos (C) +0.4 -0.1 -0.6 +0.7 -0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.3 +0.3 +0.3 -0.6 -0.2
nln NLN +0.1 +0.2 -0.1 +0.6 -0.4
carbon source D-Mannitol (C) +0.3 -0.1 -0.0 +0.7 -0.3
carbon source NLDM_metabolites (C) +0.4 +0.3 -0.2 +0.6 -0.3
carbon source Sucrose (C) +0.1 -0.1 -0.3 +0.4 +0.8
nitrogen source L-Serine (N); RCH2 media; shaking -0.0 +0.3 +0.2 -0.1 +0.6
carbon source D-Glucose (C) +0.2 -0.1 +0.1 +0.6 +0.6
carbon source D,L-Lactate (C) -0.1 +0.2 -0.1 +0.4 +0.8
carbon source D,L-Lactate (C) +0.0 +0.1 +0.2 +0.3 +0.7
carbon source D-Xylose (C) +0.2 +0.2 +0.0 +0.7 +0.3
nitrogen source L-Serine (N); ShewMM media; shaking +0.5 +0.1 +0.5 -0.0 +0.5
carbon source casaminos (C) +0.2 +0.6 -0.0 +0.6 +0.2
carbon source D-Xylose (C) +0.5 +0.2 +0.2 +0.8 -0.2
carbon source Sucrose (C) +0.2 +0.2 +0.4 +0.3 +0.6
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EX31_RS01465
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EX31_RS01470
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