Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS01405 and EX31_RS01410 are separated by 209 nucleotidesEX31_RS01410 and EX31_RS01415 are separated by 4 nucleotidesEX31_RS01415 and EX31_RS01420 overlap by 4 nucleotidesEX31_RS01420 and EX31_RS01425 are separated by 192 nucleotides EX31_RS01405: EX31_RS01405 - hypothetical protein, at 313,197 to 313,604 _RS01405 EX31_RS01410: EX31_RS01410 - hypothetical protein, at 313,814 to 315,163 _RS01410 EX31_RS01415: EX31_RS01415 - virulence factor SrfB, at 315,168 to 318,140 _RS01415 EX31_RS01420: EX31_RS01420 - virulence factor, at 318,137 to 320,512 _RS01420 EX31_RS01425: EX31_RS01425 - class I fructose-bisphosphate aldolase, at 320,705 to 321,754 _RS01425
Group Condition EX31_RS01405 EX31_RS01410 EX31_RS01415 EX31_RS01420 EX31_RS01425
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.3 -0.5 -0.4 -0.8 -0.1
carbon source NLDM_metabolites (C) -0.9 -0.8 +0.1 -0.2 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.0 -0.9 -0.4 -0.3 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.3 -0.5 -0.6 -0.1
mgl MGL -0.3 -0.1 -0.2 -0.2 -0.5
nf_with_fulln NF_with_fullN -0.6 -0.4 -0.2 -0.0 +0.0
nf_with_fulln NF_with_fullN -0.3 -0.3 -0.1 -0.1 -0.2
nf_with_fulln NF_with_fullN -0.5 -0.3 -0.2 +0.1 -0.1
carbon source casaminos (C) -0.6 -0.1 +0.2 -0.0 -0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 -0.3 -0.2 -0.7 +0.3
mgl MGL -0.3 -0.3 +0.1 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.7 +0.0 +0.3 -0.0 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.1 +0.1 -0.5 -0.3
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.4 -0.3 -0.1 +0.4
nf_with10percent_fulln NF_with10percent_fullN -0.3 +0.3 -0.2 +0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.0 -0.3 +0.0 -0.4 +0.3
carbon source D-Mannitol (C) -0.4 +0.1 +0.3 -0.2 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 -0.3 +0.2 -0.3 +0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.4 +0.1 +0.2 -0.3 -0.2
nl-ccm_agar NL-CCM_agar -0.5 +0.1 +0.2 +0.3 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 -0.2 +0.2 -0.5 +0.4
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 +0.1 +0.2 -0.5 +0.2
nitrogen source L-Serine (N); ShewMM media; shaking +0.3 +0.3 +0.1 -0.3 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.4 +0.1 +0.1 +0.1 -0.3
carbon source NLDM_metabolites (C) -0.6 +0.3 +0.4 +0.1 +0.3
carbon source D,L-Lactate (C) +0.2 +0.2 +0.0 +0.3 -0.2
nl-ccm NL-CCM +0.3 +0.2 +0.1 +0.3 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 +0.0 +0.2 +0.3 +0.1
nitrogen source L-Serine (N); ShewMM media; shaking +0.2 +0.3 +0.3 +0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; no shaking +0.4 +0.2 +0.3 +0.7 -0.1
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EX31_RS01405
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EX31_RS01410
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EX31_RS01425
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