Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS01235 and EX31_RS01240 are separated by 229 nucleotidesEX31_RS01240 and EX31_RS01245 are separated by 70 nucleotidesEX31_RS01245 and EX31_RS01250 are separated by 220 nucleotidesEX31_RS01250 and EX31_RS01255 are separated by 134 nucleotides EX31_RS01235: EX31_RS01235 - metalloregulator ArsR/SmtB family transcription factor, at 274,653 to 274,973 _RS01235 EX31_RS01240: EX31_RS01240 - glycoside hydrolase family 10 protein, at 275,203 to 276,588 _RS01240 EX31_RS01245: EX31_RS01245 - ferric-rhodotorulic acid/ferric-coprogen receptor FhuE, at 276,659 to 278,869 _RS01245 EX31_RS01250: EX31_RS01250 - M24 family metallopeptidase, at 279,090 to 280,484 _RS01250 EX31_RS01255: EX31_RS01255 - Crp/Fnr family transcriptional regulator, at 280,619 to 281,251 _RS01255
Group Condition EX31_RS01235 EX31_RS01240 EX31_RS01245 EX31_RS01250 EX31_RS01255
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.6 +0.1 -0.1 -0.1 -0.4
nitrogen source L-Serine (N); ShewMM media; no shaking -0.6 +0.3 +0.0 +0.4 -1.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.3 +0.2 -0.0 -0.4 -0.3
carbon source D,L-Lactate (C) -0.6 +0.0 -0.0 +0.3 -0.4
mgl MGL -0.4 -0.1 +0.2 +0.1 -0.5
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.9 +0.2 +0.1 +0.2 -0.3
carbon source D-Xylose (C) -1.0 +0.1 -0.1 -0.2 +0.5
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.4 +0.1 +0.3 -0.3 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking +0.3 -0.6 -0.3 -0.1 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 -0.0 -0.2 +0.1 -0.6
nf_with_fulln NF_with_fullN -0.9 +0.2 -0.0 +0.4 -0.0
nf_with_fulln NF_with_fullN -0.2 +0.1 +0.1 +0.3 -0.6
nitrogen source L-Serine (N); ShewMM media; shaking +0.6 -0.0 -0.1 +0.1 -0.7
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 -0.3 +0.2 +0.2 -0.4
nf_with_fulln NF_with_fullN -0.7 +0.1 +0.0 +0.4 +0.2
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum +0.4 -0.0 +0.2 -0.0 -0.6
nl-ccm; high oxygen NL-CCM; high oxygen +0.3 +0.2 -0.1 +0.2 -0.5
carbon source casaminos (C) -0.5 +0.2 +0.1 -0.2 +0.5
carbon source NLDM_metabolites (C) +0.2 -0.7 -0.0 +0.1 +0.7
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.1 -0.0 -0.3 +0.2 +0.7
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 +0.2 +0.1 +0.2 -0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.8 -0.0 +0.1 -0.0 -0.3
carbon source NLDM_metabolites (C) +0.9 +0.1 +0.0 -0.3 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.4 +0.3 +0.2 +0.2 +0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.7 +0.2 +0.1 +0.1 -0.2
nf_with10percent_fulln NF_with10percent_fullN +1.0 +0.2 -0.1 +0.2 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.4 +0.3 +0.3 +0.2 +0.1
carbon source Sucrose (C) +0.5 +0.4 +0.2 -0.1 +0.4
nitrogen source L-Serine (N); RCH2 media; no shaking +0.8 -0.2 +0.1 +0.4 +0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.7 +0.1 +0.0 +0.1 +0.5
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