Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00855 and EX31_RS00860 are separated by 2 nucleotidesEX31_RS00860 and EX31_RS00865 are separated by 136 nucleotidesEX31_RS00865 and EX31_RS00870 are separated by 9 nucleotidesEX31_RS00870 and EX31_RS00875 overlap by 8 nucleotides EX31_RS00855: EX31_RS00855 - amidohydrolase, at 185,732 to 186,910 _RS00855 EX31_RS00860: EX31_RS00860 - pyrroline-5-carboxylate reductase, at 186,913 to 187,716 _RS00860 EX31_RS00865: EX31_RS00865 - ABC transporter permease, at 187,853 to 188,959 _RS00865 EX31_RS00870: EX31_RS00870 - ABC transporter permease, at 188,969 to 190,105 _RS00870 EX31_RS00875: EX31_RS00875 - ABC transporter ATP-binding protein, at 190,098 to 191,843 _RS00875
Group Condition EX31_RS00855 EX31_RS00860 EX31_RS00865 EX31_RS00870 EX31_RS00875
carbon source casaminos (C) -0.1 -0.2 -0.4 -0.4 +0.1
carbon source D-Mannitol (C) -0.2 -0.1 -0.2 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.3 -0.0 -0.4 +0.1 +0.1
carbon source D,L-Lactate (C) +0.1 -0.1 -0.4 -0.2 +0.0
carbon source casaminos (C) -0.1 -0.2 -0.2 -0.2 +0.2
nf_with_fulln NF_with_fullN -0.2 +0.1 +0.0 -0.3 -0.2
nf_with_fulln NF_with_fullN -0.3 +0.2 -0.1 -0.2 -0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking -0.2 +0.1 -0.3 +0.1 -0.2
carbon source NLDM_metabolites (C) -0.6 +0.1 +0.1 -0.1 +0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.2 -0.1 -0.3 +0.2 -0.3
nf_with_fulln NF_with_fullN -0.1 +0.3 -0.1 -0.2 -0.2
carbon source Sucrose (C) +0.2 -0.0 -0.2 -0.3 +0.0
nf_with_fulln NF_with_fullN -0.1 +0.2 +0.0 -0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.3 +0.2 +0.2 -0.0 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -0.4 +0.1 -0.1 +0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.1 +0.1 -0.4 +0.2 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking -0.1 +0.0 -0.2 +0.4 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.0 +0.3 -0.2 -0.2 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.0 +0.2 -0.3 +0.2 +0.0
carbon source D-Xylose (C) +0.4 +0.1 -0.3 -0.2 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.3 +0.2 +0.0 -0.4 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen +0.0 +0.3 -0.1 -0.2 +0.2
nf_with_fulln NF_with_fullN +0.2 +0.2 +0.1 -0.2 +0.0
carbon source D-Glucose (C) +0.2 +0.1 +0.0 -0.2 +0.4
nitrogen source L-Serine (N); ShewMM media; shaking -0.2 +0.2 +0.0 +0.0 +0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 +0.4 -0.3 +0.5 +0.0
nl-ccm; vial NL-CCM; vial +0.1 +0.0 +0.3 -0.2 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.0 +0.3 -0.2 +0.3 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.1 +0.2 -0.1 +0.4 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.0 +0.1 +0.3 +0.3 +0.1
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EX31_RS00855
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EX31_RS00860
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EX31_RS00870
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EX31_RS00875
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