Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00710 and EX31_RS00715 are separated by 125 nucleotidesEX31_RS00715 and EX31_RS00720 are separated by 138 nucleotidesEX31_RS00720 and EX31_RS00725 are separated by 554 nucleotidesEX31_RS00725 and EX31_RS00730 are separated by 18 nucleotides EX31_RS00710: EX31_RS00710 - HAMP domain-containing protein, at 150,959 to 152,623 _RS00710 EX31_RS00715: EX31_RS00715 - class A beta-lactamase, at 152,749 to 153,636 _RS00715 EX31_RS00720: EX31_RS00720 - hypothetical protein, at 153,775 to 154,152 _RS00720 EX31_RS00725: EX31_RS00725 - diaminobutyrate--2-oxoglutarate transaminase, at 154,707 to 156,092 _RS00725 EX31_RS00730: EX31_RS00730 - aspartate aminotransferase family protein, at 156,111 to 157,583 _RS00730
Group Condition EX31_RS00710 EX31_RS00715 EX31_RS00720 EX31_RS00725 EX31_RS00730
carbon source NLDM_metabolites (C) -1.6 -1.5 -0.4 +0.1 +0.0
carbon source casaminos (C) +0.0 -1.4 +0.0 -0.1 -0.5
mgl MGL -0.1 -0.3 -0.2 -0.1 -0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.1 -0.3 -0.3 -0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.5 +0.1 -0.2 -0.1 -0.2
carbon source casaminos (C) -0.3 -0.6 +0.3 -0.0 -0.2
carbon source Sucrose (C) +0.5 -1.1 -0.2 +0.1 -0.0
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.5 -0.4 +0.1 +0.1
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.3 -0.6 +0.5 +0.0 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 -0.7 +0.2 -0.2 -0.0
nitrogen source L-Glutamine (N); RCH2 media; no shaking +0.1 -0.4 -0.4 +0.2 -0.1
nf_with_fulln NF_with_fullN +0.2 -0.1 -0.4 +0.1 -0.3
nf_with_fulln NF_with_fullN +0.4 -0.0 -0.7 +0.1 -0.2
nf_with_fulln NF_with_fullN +0.2 +0.2 -0.5 +0.0 -0.3
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.2 +0.2 -0.2 -0.2 -0.3
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.6 +0.1 +0.1 +0.2
nf_with_fulln NF_with_fullN +0.2 +0.2 -0.4 +0.0 -0.3
nitrogen source L-Serine (N); RCH2 media; shaking -0.1 -0.6 +0.5 -0.0 +0.1
carbon source D-Xylose (C) +0.1 +0.1 -0.6 +0.3 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.1 -0.3 +0.2 +0.3
nitrogen source Ammonium chloride (N); RCH2 media; shaking -0.2 +0.4 +0.1 +0.0 -0.4
carbon source D,L-Lactate (C) +0.2 +0.2 -0.6 +0.2 +0.2
carbon source D-Mannitol (C) +0.2 -0.5 -0.1 +0.2 +0.5
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.3 -0.4 +0.1 +0.3
carbon source D,L-Lactate (C) +0.0 +0.0 +0.6 +0.1 -0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 +0.2 +0.5 +0.0 -0.0
carbon source D-Mannitol (C) -0.1 -0.3 +0.2 +0.3 +0.4
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 +0.6 -0.3 +0.1 +0.2
carbon source D-Xylose (C) +0.4 -0.1 -0.2 +0.2 +0.4
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 +0.6 +0.3 +0.1 -0.4
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EX31_RS00710
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EX31_RS00715
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EX31_RS00730
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