Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00260 and EX31_RS00265 are separated by 21 nucleotidesEX31_RS00265 and EX31_RS00270 are separated by 787 nucleotidesEX31_RS00270 and EX31_RS00275 are separated by 178 nucleotidesEX31_RS00275 and EX31_RS00280 are separated by 55 nucleotides EX31_RS00260: EX31_RS00260 - hypothetical protein, at 53,964 to 55,040 _RS00260 EX31_RS00265: EX31_RS00265 - alpha/beta hydrolase, at 55,062 to 55,820 _RS00265 EX31_RS00270: EX31_RS00270 - TonB-dependent receptor, at 56,608 to 58,761 _RS00270 EX31_RS00275: EX31_RS00275 - glucose/quinate/shikimate family membrane-bound PQQ-dependent dehydrogenase, at 58,940 to 61,339 _RS00275 EX31_RS00280: EX31_RS00280 - N-acetyltransferase, at 61,395 to 61,853 _RS00280
Group Condition EX31_RS00260 EX31_RS00265 EX31_RS00270 EX31_RS00275 EX31_RS00280
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.7 -0.6 -0.3 -0.1 -0.0
carbon source D-Xylose (C) -0.3 -0.7 -0.2 +0.2 -0.4
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.3 -0.0 -0.3 -0.4 -0.4
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.4 -0.3 -0.1 -0.1 -0.1
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.1 -0.2 -0.2 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking -0.1 -0.1 -0.2 +0.0 -0.4
carbon source Sucrose (C) -0.4 -0.2 -0.0 -0.1 +0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.2 -0.1 -0.2 -0.3 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking -0.2 +0.1 -0.1 +0.1 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.0 +0.1 +0.1 -0.1 -0.6
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.2 -0.3 -0.1 -0.1 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking -0.2 -0.2 -0.2 -0.2 +0.4
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.2 -0.1 +0.1 -0.1 -0.4
nl-ccm; high oxygen NL-CCM; high oxygen +0.2 -0.3 +0.2 +0.0 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.4 -0.1 -0.1 +0.1 -0.4
carbon source D-Xylose (C) +0.1 -0.4 -0.1 +0.2 +0.1
nln NLN +0.2 -0.2 +0.1 +0.1 -0.2
nf_with_fulln NF_with_fullN +0.1 -0.1 +0.2 +0.1 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 -0.2 -0.0 -0.2 +0.2
nf_with10percent_fulln NF_with10percent_fullN +0.1 +0.0 +0.2 +0.1 -0.3
carbon source casaminos (C) -0.1 +0.3 +0.2 -0.1 -0.1
nl-ccm; low oxygen NL-CCM; low oxygen +0.1 +0.0 +0.2 +0.2 -0.3
nln NLN +0.3 -0.1 +0.2 +0.2 -0.1
carbon source NLDM_metabolites (C) +0.2 -0.1 -0.1 -0.0 +0.5
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.4 -0.1 +0.2 +0.3 -0.3
carbon source NLDM_metabolites (C) +0.3 -0.1 +0.2 -0.1 +0.3
nf_with_fulln NF_with_fullN +0.2 +0.1 +0.2 +0.2 -0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.3 -0.0 +0.1 -0.0 +0.5
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum +0.1 +0.1 +0.1 +0.1 +0.5
nln NLN +0.3 -0.1 +0.2 +0.3 +0.3
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EX31_RS00260
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EX31_RS00265
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EX31_RS00280
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