Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00240 and EX31_RS00245 are separated by 401 nucleotidesEX31_RS00245 and EX31_RS00250 are separated by 195 nucleotidesEX31_RS00250 and EX31_RS00255 are separated by 71 nucleotidesEX31_RS00255 and EX31_RS00260 are separated by 141 nucleotides EX31_RS00240: EX31_RS00240 - rhamnose ABC transporter substrate-binding protein, at 49,316 to 50,308 _RS00240 EX31_RS00245: EX31_RS00245 - HTH-type transcriptional activator RhaS, at 50,710 to 51,534 _RS00245 EX31_RS00250: EX31_RS00250 - aldehyde dehydrogenase, at 51,730 to 53,169 _RS00250 EX31_RS00255: EX31_RS00255 - hypothetical protein, at 53,241 to 53,822 _RS00255 EX31_RS00260: EX31_RS00260 - hypothetical protein, at 53,964 to 55,040 _RS00260
Group Condition EX31_RS00240 EX31_RS00245 EX31_RS00250 EX31_RS00255 EX31_RS00260
carbon source D,L-Lactate (C) -0.4 -0.2 -0.6 -0.1 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 -0.5 +0.0 -0.0 -0.7
carbon source D-Mannitol (C) -0.3 -0.3 -0.3 -0.2 -0.2
nl-ccm; high oxygen NL-CCM; high oxygen -0.3 -0.4 +0.0 -0.4 -0.1
carbon source D-Xylose (C) -0.2 -0.1 -0.1 -0.3 -0.3
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.3 -0.5 +0.1 -0.4 +0.2
carbon source Sucrose (C) -0.4 -0.5 +0.1 +0.4 -0.4
carbon source D-Xylose (C) -0.3 +0.1 -0.3 -0.3 +0.1
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.3 -0.1 -0.4 +0.1
carbon source Sucrose (C) -0.3 -0.3 +0.2 +0.0 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.1 -0.6 +0.0 +0.1 +0.1
nitrogen source Ammonium chloride (N); ShewMM media; no shaking -0.4 -0.3 -0.1 +0.4 -0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 -0.4 -0.5 +0.1 +0.1
nl-ccm NL-CCM +0.1 -0.4 +0.1 -0.3 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.5 +0.0 +0.0 +0.4
nf_with10percent_fulln NF_with10percent_fullN -0.3 -0.2 -0.1 +0.2 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 +0.1 +0.0 -0.5 +0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.2 -0.3 +0.2 +0.1 -0.1
carbon source D-Mannitol (C) -0.2 +0.5 -0.1 -0.2 -0.1
nitrogen source L-Serine (N); ShewMM media; no shaking +0.0 -0.4 -0.2 +0.3 +0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -0.2 +0.4 +0.3 -0.7 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 +0.4 -0.0 -0.3 +0.1
carbon source NLDM_metabolites (C) -0.6 -0.1 +0.0 +0.6 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; no shaking +0.2 +0.4 -0.0 +0.0 -0.4
nitrogen source L-Serine (N); RCH2 media; shaking +0.2 +0.3 -0.2 +0.4 -0.2
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.2 +0.4 +0.2 +0.2 +0.0
nf_with_fulln NF_with_fullN -0.2 +0.2 -0.0 +0.5 +0.1
nitrogen source L-Serine (N); RCH2 media; no shaking +0.2 +0.4 +0.1 +0.2 -0.3
mgl MGL -0.4 +0.3 +0.2 +0.2 +0.3
carbon source NLDM_metabolites (C) +0.1 +0.3 -0.1 +0.3 +0.3
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EX31_RS00240
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EX31_RS00260
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