Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00215 and EX31_RS00220 are separated by 156 nucleotidesEX31_RS00220 and EX31_RS00225 are separated by 52 nucleotidesEX31_RS00225 and EX31_RS00230 are separated by 56 nucleotidesEX31_RS00230 and EX31_RS00235 overlap by 4 nucleotides EX31_RS00215: EX31_RS00215 - ketopantoate reductase family protein, at 43,798 to 44,721 _RS00215 EX31_RS00220: EX31_RS00220 - Fic family protein, at 44,878 to 45,651 _RS00220 EX31_RS00225: EX31_RS00225 - ABC transporter permease, at 45,704 to 46,666 _RS00225 EX31_RS00230: EX31_RS00230 - ABC transporter permease, at 46,723 to 47,736 _RS00230 EX31_RS00235: EX31_RS00235 - sugar ABC transporter ATP-binding protein, at 47,733 to 49,247 _RS00235
Group Condition EX31_RS00215 EX31_RS00220 EX31_RS00225 EX31_RS00230 EX31_RS00235
carbon source NLDM_metabolites (C) -0.4 -0.9 -0.2 -0.1 -0.4
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.1 -0.1 +0.0 -1.1 -0.1
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.1 -0.3 -0.2 -0.9 +0.1
mgl MGL +0.0 -0.4 -0.1 -0.7 +0.0
nf_with10percent_fulln NF_with10percent_fullN -0.4 -0.6 +0.0 -0.3 +0.2
nitrogen source L-Serine (N); RCH2 media; shaking +0.1 -0.1 +0.4 -1.1 -0.1
carbon source casaminos (C) +0.0 -0.9 -0.1 +0.2 -0.0
carbon source Sucrose (C) -0.6 -0.7 +0.0 +0.3 +0.1
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.0 -0.2 +0.1 -0.8 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.2 +0.1 -0.1 -0.9 +0.2
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.2 -0.3 -0.0 -0.6 -0.1
nitrogen source L-Glutamine (N); RCH2 media; shaking +0.1 -0.2 +0.1 -0.6 -0.2
nln NLN -0.3 -0.6 +0.1 +0.0 +0.2
nitrogen source L-Glutamine (N); ShewMM media; shaking +0.3 -0.1 -0.0 -0.6 -0.2
nitrogen source Ammonium chloride (N); ShewMM media; no shaking +0.3 -0.1 +0.2 -0.8 -0.2
nitrogen source L-Glutamine (N); RCH2 media; shaking -0.1 +0.3 +0.1 -0.7 +0.0
carbon source D-Xylose (C) -0.2 -1.0 +0.3 +0.5 -0.0
nitrogen source L-Serine (N); RCH2 media; no shaking +0.3 -0.1 +0.2 -0.8 -0.1
carbon source D,L-Lactate (C) -0.4 +0.3 +0.1 -0.3 -0.1
nf_with_fulln NF_with_fullN -0.2 -0.5 +0.1 +0.1 +0.2
nitrogen source L-Glutamine (N); ShewMM media; no shaking +0.3 -0.1 +0.0 -0.7 +0.2
carbon source D-Mannitol (C) -0.2 -0.6 +0.1 +0.4 +0.1
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -0.2 +0.4 -0.2 +0.1 -0.2
carbon source D,L-Lactate (C) -0.3 -0.5 -0.0 +0.8 +0.1
carbon source D-Xylose (C) -0.2 -0.3 -0.1 +0.6 +0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.2 -0.2 -0.1 +0.5 +0.1
carbon source D-Glucose (C) -0.2 -0.3 +0.2 +0.5 +0.1
carbon source D-Mannitol (C) -0.2 -0.3 -0.0 +0.7 +0.1
carbon source Sucrose (C) +0.1 -0.5 +0.0 +0.7 +0.1
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.1 +0.2 +0.1 +0.6 +0.1
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EX31_RS00215
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EX31_RS00220
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EX31_RS00235
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