Fitness for 5 genes in Rahnella sp. WP5

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500 ntEX31_RS00170 and EX31_RS25880 are separated by 143 nucleotidesEX31_RS25880 and EX31_RS00175 are separated by 278 nucleotidesEX31_RS00175 and EX31_RS00180 are separated by 132 nucleotidesEX31_RS00180 and EX31_RS00185 are separated by 100 nucleotides EX31_RS00170: EX31_RS00170 - DUF1471 domain-containing protein, at 35,737 to 36,042 _RS00170 EX31_RS25880: EX31_RS25880 - hypothetical protein, at 36,186 to 36,407 _RS25880 EX31_RS00175: EX31_RS00175 - membrane protein, at 36,686 to 37,963 _RS00175 EX31_RS00180: EX31_RS00180 - aldehyde dehydrogenase family protein, at 38,096 to 39,481 _RS00180 EX31_RS00185: EX31_RS00185 - LysR family transcriptional regulator, at 39,582 to 40,466 _RS00185
Group Condition EX31_RS00170 EX31_RS25880 EX31_RS00175 EX31_RS00180 EX31_RS00185
nitrogen source L-Glutamine (N); RCH2 media; shaking -2.1 -0.3 +0.1 -0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -1.3 -0.3 -0.1 -0.4 -0.3
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum -1.2 -0.3 -0.2 -0.3 -0.2
nitrogen source L-Serine (N); RCH2 media; no shaking -1.1 -0.4 -0.1 -0.3 -0.3
carbon source D,L-Lactate (C) -2.0 -0.4 -0.0 +0.1 +0.3
nitrogen source L-Glutamine (N); RCH2 media; shaking -1.2 -0.6 +0.1 -0.0 -0.4
carbon source NLDM_metabolites (C) -0.2 -0.4 -0.8 -0.5 -0.2
nitrogen source L-Serine (N); ShewMM media; shaking -1.4 -0.5 +0.2 -0.1 -0.1
nitrogen source L-Serine (N); ShewMM media; shaking -1.0 -0.4 -0.1 -0.1 +0.0
nl-ccm; vial NL-CCM; vial -1.7 -0.1 +0.2 +0.2 -0.2
nf_with_fulln NF_with_fullN -1.3 -0.2 -0.3 +0.2 +0.0
mixed community NL-CCM; Mixed culture; Herbiconiux sp. 11RBC 2:1 starting OD to Azospirillum -0.8 -0.5 +0.1 -0.2 -0.2
mixed community NL-CCM; Mixed culture; Sphingobium sp. HT1-2 2:1 starting OD to Azospirillum -1.2 -0.1 +0.0 -0.1 -0.1
mgl MGL -0.5 -0.5 -0.2 -0.1 -0.1
nitrogen source L-Glutamine (N); RCH2 media; no shaking -0.7 -0.1 -0.2 -0.3 -0.1
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.7 -0.2 -0.2 -0.0 -0.2
nf_with_fulln NF_with_fullN -0.6 -0.4 -0.3 +0.1 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; no shaking -0.7 -0.3 +0.1 -0.2 -0.0
carbon source casaminos (C) -1.0 +0.1 +0.1 -0.3 -0.0
nf_with10percent_fulln NF_with10percent_fullN -0.9 +0.2 -0.3 +0.2 +0.0
mixed community NL-CCM; Mixed culture; Sphingobium sp. WW5 2:1 starting OD to Azospirillum +0.2 -0.8 -0.1 +0.1 -0.1
nl-ccm; high oxygen NL-CCM; high oxygen -0.7 +0.0 -0.4 +0.1 +0.3
carbon source Sucrose (C) -0.8 +0.2 -0.2 +0.1 -0.0
nl-ccm; ambient oxygen NL-CCM; ambient oxygen -0.5 -0.0 -0.3 +0.1 +0.3
nitrogen source Ammonium chloride (N); ShewMM media; shaking -0.9 +0.1 +0.3 +0.1 +0.0
carbon source D-Xylose (C) -0.5 +0.5 -0.4 +0.2 -0.0
nitrogen source Ammonium chloride (N); RCH2 media; shaking +0.7 -0.5 +0.1 +0.0 -0.1
carbon source D,L-Lactate (C) -0.1 +0.8 -0.1 -0.1 -0.2
nl-ccm; ambient oxygen NL-CCM; ambient oxygen +0.6 +0.2 -0.3 +0.1 +0.2
carbon source casaminos (C) +0.4 +0.4 -0.3 +0.1 +0.3
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EX31_RS00170
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EX31_RS25880
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EX31_RS00185
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