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Gene
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Cofit
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS30210 and ECOLIN_RS26885 are separated by 18 nucleotides
ECOLIN_RS26885 and ECOLIN_RS33200 are separated by 102 nucleotides
ECOLIN_RS33200 and ECOLIN_RS26890 are separated by 267 nucleotides
ECOLIN_RS26890 and ECOLIN_RS31155 are separated by 62 nucleotides
ECOLIN_RS30210: ECOLIN_RS30210 - ClbS/DfsB family four-helix bundle protein, at 5,381,793 to 5,381,945
_RS30210
ECOLIN_RS26885: ECOLIN_RS26885 - ISL3-like element ISEc53 family transposase, at 5,381,964 to 5,383,184
_RS26885
ECOLIN_RS33200: ECOLIN_RS33200 - restriction endonuclease, at 5,383,287 to 5,383,492
_RS33200
ECOLIN_RS26890: ECOLIN_RS26890 - helicase YjhR, at 5,383,760 to 5,384,866
_RS26890
ECOLIN_RS31155: ECOLIN_RS31155 - IS3-like element ISEc52 family transposase, at 5,384,929 to 5,386,098
_RS31155
Group
Condition
ECOLIN
_RS30210
ECOLIN
_RS26885
ECOLIN
_RS33200
ECOLIN
_RS26890
ECOLIN
_RS31155
phage
Bas68
N.D.
N.D.
N.D.
-0.8
N.D.
phage
EV219
N.D.
N.D.
N.D.
-0.4
N.D.
phage
Bas10
N.D.
N.D.
N.D.
-0.4
N.D.
phage
JK16
N.D.
N.D.
N.D.
-0.3
N.D.
no phage control
Control_Nissle
N.D.
N.D.
N.D.
-0.3
N.D.
phage
K25
N.D.
N.D.
N.D.
-0.3
N.D.
phage
Bas48
N.D.
N.D.
N.D.
-0.3
N.D.
phage
Bas27
N.D.
N.D.
N.D.
-0.3
N.D.
phage
P1vir
N.D.
N.D.
N.D.
-0.2
N.D.
phage
Bas10
N.D.
N.D.
N.D.
-0.2
N.D.
phage
Bas21
N.D.
N.D.
N.D.
-0.2
N.D.
phage
Bas63
N.D.
N.D.
N.D.
-0.2
N.D.
phage
TP7
N.D.
N.D.
N.D.
-0.2
N.D.
phage
Bas38
N.D.
N.D.
N.D.
-0.1
N.D.
phage
JK38
N.D.
N.D.
N.D.
-0.1
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
-0.1
N.D.
phage
Bas31
N.D.
N.D.
N.D.
-0.1
N.D.
phage
Bas22
N.D.
N.D.
N.D.
-0.1
N.D.
phage
Phi92
N.D.
N.D.
N.D.
+0.1
N.D.
phage
TP7
N.D.
N.D.
N.D.
+0.2
N.D.
carbon source
D-Glucose
N.D.
N.D.
N.D.
+0.2
N.D.
phage
Bas38
N.D.
N.D.
N.D.
+0.2
N.D.
phage
CEV1
N.D.
N.D.
N.D.
+0.2
N.D.
phage
K25
N.D.
N.D.
N.D.
+0.2
N.D.
phage
Bas45
N.D.
N.D.
N.D.
+0.3
N.D.
phage
Bas52
N.D.
N.D.
N.D.
+0.3
N.D.
phage
K20
N.D.
N.D.
N.D.
+0.3
N.D.
phage
Bas44
N.D.
N.D.
N.D.
+0.4
N.D.
phage
Bas22
N.D.
N.D.
N.D.
+0.4
N.D.
carbon source
L-Rhamnose
N.D.
N.D.
N.D.
+0.5
N.D.
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