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Protein
Homologs
Fitness for 5 genes in
Escherichia coli Nissle 1917
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500 nt
ECOLIN_RS04280 and ECOLIN_RS04285 are separated by 215 nucleotides
ECOLIN_RS04285 and ECOLIN_RS31280 are separated by 264 nucleotides
ECOLIN_RS31280 and ECOLIN_RS04295 are separated by 275 nucleotides
ECOLIN_RS04295 and ECOLIN_RS04300 overlap by 4 nucleotides
ECOLIN_RS04280: ECOLIN_RS04280 - PKHD-type hydroxylase YbiX, at 865,960 to 866,637
_RS04280
ECOLIN_RS04285: ECOLIN_RS04285 - catecholate siderophore receptor Fiu, at 866,853 to 869,135
_RS04285
ECOLIN_RS31280: ECOLIN_RS31280 - DUF1471 family periplasmic protein McbA, at 869,400 to 869,660
_RS31280
ECOLIN_RS04295: ECOLIN_RS04295 - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 869,936 to 870,862
_RS04295
ECOLIN_RS04300: ECOLIN_RS04300 - mechanosensitive channel protein, at 870,859 to 873,084
_RS04300
Group
Condition
ECOLIN
_RS04280
ECOLIN
_RS04285
ECOLIN
_RS31280
ECOLIN
_RS04295
ECOLIN
_RS04300
phage
Bas37
N.D.
-0.4
-0.8
-1.8
-0.6
phage
Bas10
N.D.
-0.7
-0.0
-1.1
-0.2
carbon source
L-Rhamnose
N.D.
-1.4
-1.2
+0.9
-0.3
phage
Bas21
N.D.
-0.1
-0.3
-0.9
-0.5
phage
JK38
N.D.
+0.2
-0.7
-1.3
+0.1
phage
Bas04
N.D.
-0.6
-0.8
-0.2
-0.1
phage
K25
N.D.
-1.4
+0.5
-0.3
-0.3
phage
Bas37
N.D.
-0.3
+0.2
-0.7
-0.6
phage
Bas52
N.D.
-1.5
+0.1
+0.3
-0.2
carbon source
Casamino-acids
N.D.
-0.8
-0.1
+0.6
-0.7
carbon source
L-Rhamnose
N.D.
+0.3
-0.8
-0.6
-0.1
phage
JK38
N.D.
-0.2
+0.5
-0.8
-0.4
phage
Bas22
N.D.
-1.7
+0.4
+0.4
+0.2
phage
P1vir
N.D.
+0.6
+0.5
-2.4
+0.7
phage
TP7
N.D.
+0.4
+0.2
-0.4
-0.6
phage
Phi92
N.D.
-0.6
+0.2
+0.5
-0.4
phage
Bas04
N.D.
-0.7
-0.4
+0.6
+0.2
phage
K20
N.D.
-0.6
+0.6
+0.3
-0.6
phage
Bas38
N.D.
-1.0
+0.2
+0.9
-0.2
phage
Bas31
N.D.
+0.7
+0.1
-0.6
-0.3
phage
EV219
N.D.
+0.4
+0.5
-0.1
-0.7
phage
Bas05
N.D.
+0.7
-0.2
+0.4
-0.6
no phage control
Control_Nissle
N.D.
+0.0
+0.4
+0.7
-0.7
phage
CEV1
N.D.
+0.8
+0.2
+0.5
-0.9
phage
Bas38
N.D.
+0.3
+0.2
+0.8
-0.8
phage
Bas10
N.D.
+1.0
+0.3
-0.2
-0.5
phage
Bas51
N.D.
+0.4
+0.9
-0.3
-0.2
phage
Bas45
N.D.
+0.2
+0.5
-0.6
+0.7
phage
Bas68
N.D.
+0.5
+0.6
-0.5
+0.3
phage
K25
N.D.
+1.1
+0.6
+0.3
-0.1
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