Fitness for 5 genes in Escherichia coli Nissle 1917

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500 ntECOLIN_RS04280 and ECOLIN_RS04285 are separated by 215 nucleotidesECOLIN_RS04285 and ECOLIN_RS31280 are separated by 264 nucleotidesECOLIN_RS31280 and ECOLIN_RS04295 are separated by 275 nucleotidesECOLIN_RS04295 and ECOLIN_RS04300 overlap by 4 nucleotides ECOLIN_RS04280: ECOLIN_RS04280 - PKHD-type hydroxylase YbiX, at 865,960 to 866,637 _RS04280 ECOLIN_RS04285: ECOLIN_RS04285 - catecholate siderophore receptor Fiu, at 866,853 to 869,135 _RS04285 ECOLIN_RS31280: ECOLIN_RS31280 - DUF1471 family periplasmic protein McbA, at 869,400 to 869,660 _RS31280 ECOLIN_RS04295: ECOLIN_RS04295 - 23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF, at 869,936 to 870,862 _RS04295 ECOLIN_RS04300: ECOLIN_RS04300 - mechanosensitive channel protein, at 870,859 to 873,084 _RS04300
Group Condition ECOLIN_RS04280 ECOLIN_RS04285 ECOLIN_RS31280 ECOLIN_RS04295 ECOLIN_RS04300
phage Bas37 N.D. -0.4 -0.8 -1.8 -0.6
phage Bas10 N.D. -0.7 -0.0 -1.1 -0.2
carbon source L-Rhamnose N.D. -1.4 -1.2 +0.9 -0.3
phage Bas21 N.D. -0.1 -0.3 -0.9 -0.5
phage JK38 N.D. +0.2 -0.7 -1.3 +0.1
phage Bas04 N.D. -0.6 -0.8 -0.2 -0.1
phage K25 N.D. -1.4 +0.5 -0.3 -0.3
phage Bas37 N.D. -0.3 +0.2 -0.7 -0.6
phage Bas52 N.D. -1.5 +0.1 +0.3 -0.2
carbon source Casamino-acids N.D. -0.8 -0.1 +0.6 -0.7
carbon source L-Rhamnose N.D. +0.3 -0.8 -0.6 -0.1
phage JK38 N.D. -0.2 +0.5 -0.8 -0.4
phage Bas22 N.D. -1.7 +0.4 +0.4 +0.2
phage P1vir N.D. +0.6 +0.5 -2.4 +0.7
phage TP7 N.D. +0.4 +0.2 -0.4 -0.6
phage Phi92 N.D. -0.6 +0.2 +0.5 -0.4
phage Bas04 N.D. -0.7 -0.4 +0.6 +0.2
phage K20 N.D. -0.6 +0.6 +0.3 -0.6
phage Bas38 N.D. -1.0 +0.2 +0.9 -0.2
phage Bas31 N.D. +0.7 +0.1 -0.6 -0.3
phage EV219 N.D. +0.4 +0.5 -0.1 -0.7
phage Bas05 N.D. +0.7 -0.2 +0.4 -0.6
no phage control Control_Nissle N.D. +0.0 +0.4 +0.7 -0.7
phage CEV1 N.D. +0.8 +0.2 +0.5 -0.9
phage Bas38 N.D. +0.3 +0.2 +0.8 -0.8
phage Bas10 N.D. +1.0 +0.3 -0.2 -0.5
phage Bas51 N.D. +0.4 +0.9 -0.3 -0.2
phage Bas45 N.D. +0.2 +0.5 -0.6 +0.7
phage Bas68 N.D. +0.5 +0.6 -0.5 +0.3
phage K25 N.D. +1.1 +0.6 +0.3 -0.1
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